View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10100_high_3 (Length: 340)

Name: NF10100_high_3
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10100_high_3
NF10100_high_3
[»] chr2 (14 HSPs)
chr2 (36-202)||(26424883-26425049)
chr2 (198-329)||(26424167-26424297)
chr2 (1-89)||(26425028-26425116)
chr2 (41-114)||(6858689-6858762)
chr2 (63-124)||(37940133-37940194)
chr2 (62-114)||(38571671-38571723)
chr2 (94-173)||(6858766-6858845)
chr2 (71-114)||(19004823-19004866)
chr2 (46-88)||(35204366-35204408)
chr2 (44-110)||(38572247-38572313)
chr2 (97-155)||(34997014-34997072)
chr2 (95-152)||(6040404-6040461)
chr2 (44-104)||(304309-304369)
chr2 (74-110)||(42807486-42807522)
[»] chr1 (5 HSPs)
chr1 (40-172)||(46150397-46150527)
chr1 (44-104)||(14614397-14614457)
chr1 (3-89)||(45797645-45797731)
chr1 (94-143)||(41515212-41515261)
chr1 (36-92)||(45797710-45797766)
[»] chr7 (5 HSPs)
chr7 (47-173)||(36645040-36645166)
chr7 (99-155)||(30026647-30026703)
chr7 (36-152)||(15328843-15328959)
chr7 (115-172)||(48582294-48582351)
chr7 (64-114)||(42629190-42629240)
[»] chr6 (8 HSPs)
chr6 (94-174)||(35108280-35108360)
chr6 (50-153)||(3197582-3197685)
chr6 (44-114)||(1860393-1860463)
chr6 (107-173)||(7723678-7723744)
chr6 (81-153)||(17247914-17247986)
chr6 (117-172)||(31427267-31427322)
chr6 (79-114)||(31778844-31778879)
chr6 (106-168)||(14710084-14710146)
[»] chr4 (7 HSPs)
chr4 (36-168)||(53214291-53214424)
chr4 (96-181)||(4710274-4710359)
chr4 (94-173)||(42451822-42451901)
chr4 (63-104)||(9957619-9957660)
chr4 (117-172)||(4965269-4965324)
chr4 (45-113)||(34981519-34981587)
chr4 (129-173)||(53149872-53149916)
[»] chr8 (12 HSPs)
chr8 (94-168)||(28009206-28009280)
chr8 (94-168)||(28066509-28066583)
chr8 (17-74)||(18838940-18838997)
chr8 (7-89)||(18838800-18838882)
chr8 (94-173)||(41130732-41130810)
chr8 (97-174)||(24190788-24190865)
chr8 (36-109)||(24190899-24190972)
chr8 (116-167)||(13987332-13987383)
chr8 (43-104)||(36701350-36701409)
chr8 (71-113)||(42432039-42432081)
chr8 (94-175)||(18839035-18839116)
chr8 (74-114)||(7130615-7130655)
[»] chr5 (8 HSPs)
chr5 (36-173)||(5655255-5655392)
chr5 (80-172)||(36170485-36170577)
chr5 (79-178)||(17092561-17092660)
chr5 (94-175)||(34396961-34397042)
chr5 (115-168)||(36192076-36192129)
chr5 (79-122)||(15106400-15106443)
chr5 (63-104)||(7633992-7634033)
chr5 (73-114)||(25994561-25994602)
[»] chr3 (3 HSPs)
chr3 (99-154)||(38810082-38810137)
chr3 (95-173)||(42448741-42448819)
chr3 (97-173)||(32464864-32464940)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 26425049 - 26424883
Alignment:
Q  36 ataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatgggtattttcgaaagtttggtt 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||    
T  26425049 ataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcacgcggcgtgacttaaatcacgcaggggtattttcgaaagtttgatt 26424950  T
Q  136 ggaagcgaccaatttttgataagagaagagcataattccttaattttatgtagttcgataattttta 202  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  26424949 agaagcgaccaatttttgataggagaagagcataattccttaattttatgtagttcgataactttta 26424883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 198 - 329
Target Start/End: Complemental strand, 26424297 - 26424167
Alignment:
Q  198 ttttaattttcaacattcacacaccatcggtgaccatcctatgtcaaaccaccattttgctcctaaaaaatgtaaacattgtcgcaataattatggctca 297  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26424297 ttttaattttcaacattcacacaccatcggtgaccatcatatgtcaaaccaccattttgctcctaaaaaatgtaaacattgtcgcaat-attatggctca 26424199  T
Q  298 aacaaaaacacaatttaatcaccactcttcat 329  Q
    ||| |||||||| |||||||||||||||||||    
T  26424198 aacgaaaacacagtttaatcaccactcttcat 26424167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 26425116 - 26425028
Alignment:
Q  1 catgacttaaatcatgctgaaaattcacaatattcataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactca 89  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||| || |||||||||||    
T  26425116 catgacttaaatcatgctgaaaattcacaatgttcataacctacgtgagttaactcatgcatgatttataacctacgtgagttaactca 26425028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 6858762 - 6858689
Alignment:
Q  41 ctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatg 114  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||||  | ||||||||||| |||| ||||    
T  6858762 ctacgtgagttaactcacgcaaggtttataacctacgtgagttaactcacactgcgtgacttaagtcacacatg 6858689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 37940133 - 37940194
Alignment:
Q  63 ggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatgggtattttcg 124  Q
    ||||||||||||||| |||||||||||||  ||||||||||| ||||||| ||||| |||||    
T  37940133 ggtttataacctgcgtgagttaactcatgtagcgtgacttaagtcacgcaagggtactttcg 37940194  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 38571723 - 38571671
Alignment:
Q  62 aggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatg 114  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||| ||||    
T  38571723 aggtttataacctgcgagagttaactcatgcagcgtgacttaagtcacacatg 38571671  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 6858766 - 6858845
Alignment:
Q  94 gcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattc 173  Q
    ||||||||||| |||||||  ||||| ||||||||||||||||  ||||  |||||||||||| || ||||||| |||||    
T  6858766 gcgtgacttaagtcacgcagtggtatattcgaaagtttggttgagagcggacaatttttgataggaaaagagcagaattc 6858845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 19004866 - 19004823
Alignment:
Q  71 acctgcgcgagttaactcatgcggcgtgacttaaatcacgcatg 114  Q
    ||||||| |||||||||||||||||||||||||| |||||||||    
T  19004866 acctgcgtgagttaactcatgcggcgtgacttaagtcacgcatg 19004823  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 35204366 - 35204408
Alignment:
Q  46 tgagttaactcaagcaaggtttataacctgcgcgagttaactc 88  Q
    |||||||||||| ||| ||||||||||||||||||||||||||    
T  35204366 tgagttaactcacgcatggtttataacctgcgcgagttaactc 35204408  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 38572247 - 38572313
Alignment:
Q  44 cgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacg 110  Q
    |||||||||||||| ||  |||||||||| |||| || ||||||||||| ||||||||||| |||||    
T  38572247 cgtgagttaactcacgctgggtttataacatgcgtgaattaactcatgcagcgtgacttaagtcacg 38572313  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 34997072 - 34997014
Alignment:
Q  97 tgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgat 155  Q
    |||||||| |||| |||| ||||||| |||||||||||||||||  | |||||||||||    
T  34997072 tgacttaagtcacacatgagtatttttgaaagtttggttggaagtcagcaatttttgat 34997014  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 6040461 - 6040404
Alignment:
Q  95 cgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaattttt 152  Q
    |||||||||| |||||||| | ||||||| ||||||||||| | ||||| ||||||||    
T  6040461 cgtgacttaagtcacgcattgatattttcaaaagtttggtttggagcgagcaattttt 6040404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 304309 - 304369
Alignment:
Q  44 cgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaa 104  Q
    |||| ||||||||| ||| ||| ||  ||||||| |||||||||||||| |||||||||||    
T  304309 cgtgcgttaactcacgcagggtgtaacacctgcgtgagttaactcatgcagcgtgacttaa 304369  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 42807522 - 42807486
Alignment:
Q  74 tgcgcgagttaactcatgcggcgtgacttaaatcacg 110  Q
    |||| |||||||||||||||||||||||||| |||||    
T  42807522 tgcgtgagttaactcatgcggcgtgacttaagtcacg 42807486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 46150397 - 46150527
Alignment:
Q  40 cctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaa 139  Q
    |||||||||||||| ||| ||||| |||||||| |||| ||||||||||| || ||||||||||| | |||||| ||||||||  ||||||||||||| |    
T  46150397 cctacgtgagttaattcacgcaagatttataacatgcgtgagttaactcacgcagcgtgacttaagtgacgcattggtatttttaaaagtttggttggga 46150496  T
Q  140 gcgaccaatttttgataagagaagagcataatt 172  Q
    ||||  ||||||||||  |||||||||| ||||    
T  46150497 gcga--aatttttgatgggagaagagcaaaatt 46150527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 14614397 - 14614457
Alignment:
Q  44 cgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaa 104  Q
    |||||||||||||| ||  ||||||||||||||| |||||||||||| | |||||||||||    
T  14614397 cgtgagttaactcacgctgggtttataacctgcgtgagttaactcatactgcgtgacttaa 14614457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 45797645 - 45797731
Alignment:
Q  3 tgacttaaatcatgctgaaaattcacaatattcataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactca 89  Q
    |||||||| ||| |||||||||||||| | || |||| ||||||||||||| | | ||||| |||||||| | || |||||||||||    
T  45797645 tgacttaagtcacgctgaaaattcacactgtttataatctacgtgagttaatttatgcaagatttataacatacgtgagttaactca 45797731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 41515212 - 41515261
Alignment:
Q  94 gcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcga 143  Q
    |||||| |||| ||||||| ||||||||| |||||||||||||| |||||    
T  41515212 gcgtgagttaactcacgcacgggtattttggaaagtttggttgggagcga 41515261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 45797710 - 45797766
Alignment:
Q  36 ataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgc 92  Q
    ||||| ||||||||||||||||  || |||||||||| |||| ||||||| ||||||    
T  45797710 ataacatacgtgagttaactcacacagggtttataacatgcgtgagttaagtcatgc 45797766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 36645166 - 36645040
Alignment:
Q  47 gagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgacca 146  Q
    ||||||||||| ||||| ||||||| | ||| |||||||||||  |  | |||| ||||||||||| ||||||||||| |||||| ||||| ||||| ||    
T  36645166 gagttaactcacgcaagatttataatcggcgtgagttaactcacacaacatgacataaatcacgcaggggtattttcggaagtttcgttgggagcgagca 36645067  T
Q  147 atttttgataagagaagagcataattc 173  Q
    |||||| || ||||||||||| |||||    
T  36645066 attttttatgagagaagagcagaattc 36645040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 30026647 - 30026703
Alignment:
Q  99 acttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgat 155  Q
    |||||| ||||||||||||||||||||| |||||||||||||| | |||||||||||    
T  30026647 acttaagtcacgcatgggtattttcgaaggtttggttggaagcaagcaatttttgat 30026703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 15328959 - 15328843
Alignment:
Q  36 ataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatgggtattttcgaaagtttggtt 135  Q
    ||||||||| |||||||||||||||| | ||||||||| ||  || |||| |||| | |||| |||||| ||| ||| |  |||||||||| ||||||||    
T  15328959 ataacctacatgagttaactcaagcaggatttataaccagcatgaattaattcatacagcgtaacttaagtcatgcaagaatattttcgaatgtttggtt 15328860  T
Q  136 ggaagcgaccaattttt 152  Q
    || || || ||||||||    
T  15328859 gggagtgaacaattttt 15328843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 48582294 - 48582351
Alignment:
Q  115 ggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataatt 172  Q
    ||||||||||||||||||||||| ||| | |||||||||||  |||||||||| ||||    
T  48582294 ggtattttcgaaagtttggttgggagcaagcaatttttgatgggagaagagcagaatt 48582351  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 42629190 - 42629240
Alignment:
Q  64 gtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatg 114  Q
    ||||||||| |||| |||||||||||||| ||||||||||| ||| |||||    
T  42629190 gtttataacatgcgtgagttaactcatgcagcgtgacttaagtcatgcatg 42629240  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 35108360 - 35108280
Alignment:
Q  94 gcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattcc 174  Q
    ||||||||||| ||||||||| ||||||||  |||||||||||||||||| |||||||||||   ||||||||||||||||    
T  35108360 gcgtgacttaagtcacgcatgagtattttcagaagtttggttggaagcgagcaatttttgatggaagaagagcataattcc 35108280  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 3197582 - 3197685
Alignment:
Q  50 ttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatt 149  Q
    ||||||||||| ||  ||||| || ||| ||||||| ||| |  ||| || |||| ||||||||| ||||||||  |||||||||||||||||| |||||    
T  3197582 ttaactcaagcgagtgttatacccagcgtgagttaattcaggtagcgcgagttaactcacgcatgagtattttcagaagtttggttggaagcgaacaatt 3197681  T
Q  150 tttg 153  Q
    ||||    
T  3197682 tttg 3197685  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 1860463 - 1860393
Alignment:
Q  44 cgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatg 114  Q
    ||||||||||||||  |  ||||||||||||||| ||||||||| |||  ||||||||||| |||||||||    
T  1860463 cgtgagttaactcacactgggtttataacctgcgtgagttaacttatgttgcgtgacttaagtcacgcatg 1860393  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 7723744 - 7723678
Alignment:
Q  107 cacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattc 173  Q
    ||||||| |||||||||  |||||||||||| | ||| |||||||||||| |||||||||| |||||    
T  7723744 cacgcatcggtattttcagaagtttggttgggaacgagcaatttttgataggagaagagcagaattc 7723678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 17247986 - 17247914
Alignment:
Q  81 gttaactcatgcggcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttg 153  Q
    ||||||||| || |||||| |||| |||||||   ||||||||| |||||||||||| ||||| |||||||||    
T  17247986 gttaactcacgctgcgtgagttaactcacgcagaagtattttcggaagtttggttgggagcgagcaatttttg 17247914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 31427322 - 31427267
Alignment:
Q  117 tattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataatt 172  Q
    ||||||||||||||||||| | ||||| |||||||||||  |||||||||| ||||    
T  31427322 tattttcgaaagtttggttaggagcgagcaatttttgatgggagaagagcagaatt 31427267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 31778879 - 31778844
Alignment:
Q  79 gagttaactcatgcggcgtgacttaaatcacgcatg 114  Q
    |||||||||||||||||||||||||| |||||||||    
T  31778879 gagttaactcatgcggcgtgacttaagtcacgcatg 31778844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 14710146 - 14710084
Alignment:
Q  106 tcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcat 168  Q
    ||||||||||||||||| ||||||| ||||||||| || || |||||| |  |||||||||||    
T  14710146 tcacgcatgggtattttggaaagttgggttggaagtgagcattttttgttgggagaagagcat 14710084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 53214424 - 53214291
Alignment:
Q  36 ataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtga--cttaaatcacgcatgggtattttcgaaagtttgg 133  Q
    ||||||||||||||||||||||  || | ||||||||| |   |||||||||||||| ||||||  ||||| |||||||||  ||||||||||||||| |    
T  53214424 ataacctacgtgagttaactcacacaggatttataaccagtatgagttaactcatgcagcgtgagacttaagtcacgcatga-tattttcgaaagtttag 53214326  T
Q  134 ttggaagcgaccaatttttgataagagaagagcat 168  Q
    |||| ||||| |||||||||||  ||| |||||||    
T  53214325 ttgggagcgagcaatttttgatgggaggagagcat 53214291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 4710359 - 4710274
Alignment:
Q  96 gtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattccttaattt 181  Q
    ||||||||| ||||||||| |||||||| ||||||||||||| ||||| |||||||| ||  |||||||||| ||||||| |||||    
T  4710359 gtgacttaagtcacgcatgagtattttcaaaagtttggttgggagcgagcaattttttatgggagaagagcagaattcctaaattt 4710274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 42451901 - 42451822
Alignment:
Q  94 gcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattc 173  Q
    ||||||||||| |||| |||| |||||||||||||||||||||| ||| | |||||||| ||  ||||||||||||||||    
T  42451901 gcgtgacttaagtcacacatgagtattttcgaaagtttggttgggagcaagcaattttttatgggagaagagcataattc 42451822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 9957660 - 9957619
Alignment:
Q  63 ggtttataacctgcgcgagttaactcatgcggcgtgacttaa 104  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  9957660 ggtttataacctgcgtgagttaactcatgctgcgtgacttaa 9957619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 4965324 - 4965269
Alignment:
Q  117 tattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataatt 172  Q
    ||||||||||||||||||||| ||  | |||||||||||| |||||||||| ||||    
T  4965324 tattttcgaaagtttggttggtagtaagcaatttttgataggagaagagcagaatt 4965269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 34981587 - 34981519
Alignment:
Q  45 gtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcat 113  Q
    ||||||||||||| ||  |||||||||| | || ||||||||| ||||| |||||||||| | ||||||    
T  34981587 gtgagttaactcacgctgggtttataacattcgtgagttaacttatgcgacgtgacttaactgacgcat 34981519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 53149916 - 53149872
Alignment:
Q  129 tttggttggaagcgaccaatttttgataagagaagagcataattc 173  Q
    ||||||||||||| | |||||||| || |||||||||||||||||    
T  53149916 tttggttggaagcaagcaattttttatgagagaagagcataattc 53149872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 28009206 - 28009280
Alignment:
Q  94 gcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcat 168  Q
    |||||| |||| ||||||| ||||||||| |||||||||||||| ||||| |||||||||||  |||||||||||    
T  28009206 gcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagcat 28009280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 28066509 - 28066583
Alignment:
Q  94 gcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcat 168  Q
    |||||| |||| ||||||| ||||||||| |||||||||||||| ||||| |||||||||||  |||||||||||    
T  28066509 gcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagcat 28066583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 18838940 - 18838997
Alignment:
Q  17 ctgaaaattcacaatattcataacctacgtgagttaactcaagcaaggtttataacct 74  Q
    ||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||    
T  18838940 ctgaaaattcacaatgtttataacctacatgagttaactcacgcaaggtttataacct 18838997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 18838882 - 18838800
Alignment:
Q  7 ttaaatcatgctgaaaattcacaatattcataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactca 89  Q
    |||| ||| |||||||||||||| | || ||||||||  |||||||||||| |||||||||||||| | || |||||||||||    
T  18838882 ttaagtcacgctgaaaattcacactgtttataacctaaatgagttaactcatgcaaggtttataacttacgtgagttaactca 18838800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 41130732 - 41130810
Alignment:
Q  94 gcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattc 173  Q
    ||||||||||| | ||||||||||||||||| |||||| ||||| | ||| |||||||| ||  ||||||||||||||||    
T  41130732 gcgtgacttaagttacgcatgggtattttcggaagttt-gttgggaacgaacaattttttatgggagaagagcataattc 41130810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 24190865 - 24190788
Alignment:
Q  97 tgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattcc 174  Q
    |||||||||||||||| |||||||||   |||||||||||| ||| | |||||||| ||  |||||||||| ||||||    
T  24190865 tgacttaaatcacgcaggggtattttttgaagtttggttgggagcaagcaattttttatgggagaagagcagaattcc 24190788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 24190899 - 24190972
Alignment:
Q  36 ataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcac 109  Q
    ||||||||| |||||||||||| | | | ||||||||| ||| ||||||||||| || ||||||||||| ||||    
T  24190899 ataacctacatgagttaactcacgtatgatttataaccagcgtgagttaactcacgcagcgtgacttaagtcac 24190972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 13987383 - 13987332
Alignment:
Q  116 gtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagca 167  Q
    ||||||| ||||||||||||||||| || |||||||||||  ||||||||||    
T  13987383 gtattttggaaagtttggttggaagtgagcaatttttgatgggagaagagca 13987332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 36701409 - 36701350
Alignment:
Q  43 acgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaa 104  Q
    ||||||||||||||| |   ||||||||||||||| |||||||||||||  |||||||||||    
T  36701409 acgtgagttaactcacgg--ggtttataacctgcgtgagttaactcatgttgcgtgacttaa 36701350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 42432039 - 42432081
Alignment:
Q  71 acctgcgcgagttaactcatgcggcgtgacttaaatcacgcat 113  Q
    ||||||| |||||||||||||  ||||||||||||||||||||    
T  42432039 acctgcgtgagttaactcatgtagcgtgacttaaatcacgcat 42432081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 18839035 - 18839116
Alignment:
Q  94 gcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattcct 175  Q
    ||||||||||| ||| ||| ||||||||||| |||||||| ||| || || ||| ||||  || |||||||||| |||||||    
T  18839035 gcgtgacttaactcatgcaggggtattttcggaagtttggatgggagtgagcaaattttattatgagaagagcagaattcct 18839116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 7130615 - 7130655
Alignment:
Q  74 tgcgcgagttaactcatgcggcgtgacttaaatcacgcatg 114  Q
    |||| |||||||||||||| ||||||||||| |||||||||    
T  7130615 tgcgtgagttaactcatgcagcgtgacttaagtcacgcatg 7130655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 5655392 - 5655255
Alignment:
Q  36 ataacctacgtgagttaactcaagcaaggtttataacctgcgcgagttaactcatgcggcgtgacttaaatcacgcatgggtattttcgaaagtttggtt 135  Q
    ||||||||| |||||||||||  |||   ||||||||||  | ||||||||||   | ||||||||||| |||| || |  |||||||| ||||||||||    
T  5655392 ataacctacatgagttaactcgcgcagaatttataacctatgtgagttaactcgcacagcgtgacttaagtcacacaggaatattttcggaagtttggtt 5655293  T
Q  136 ggaagcgaccaatttttgataagagaagagcataattc 173  Q
    |||||||| |||||||| ||  |||||||||| |||||    
T  5655292 ggaagcgaacaattttttatgggagaagagcagaattc 5655255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 36170485 - 36170577
Alignment:
Q  80 agttaactcatgcggcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataatt 172  Q
    |||||||||| || || ||| |||| ||||||| |||||||||||||||||| ||||| |||||  |||||||| |  ||||| |||||||||    
T  36170485 agttaactcaagcagcttgagttaactcacgcaggggtattttcgaaagtttagttggtagcgagtaatttttgtttggagaatagcataatt 36170577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 17092561 - 17092660
Alignment:
Q  79 gagttaactcatgcggcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattccttaa 178  Q
    ||||||||||| ||  |||||||||| ||| ||| | |||||||  ||||||||||||| ||| | ||||||||| || | |||||||| ||||||||||    
T  17092561 gagttaactcacgcaacgtgacttaagtcatgcaagagtatttttaaaagtttggttgggagctagcaatttttgctatgtgaagagcagaattccttaa 17092660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 34396961 - 34397042
Alignment:
Q  94 gcgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattcct 175  Q
    ||||||||||| ||| ||| | |||||||||||||||||||||| || || |||||||| || |||||| || | |||||||    
T  34396961 gcgtgacttaagtcatgcaggtgtattttcgaaagtttggttgggagggagcaatttttaatgagagaacagaagaattcct 34397042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 36192129 - 36192076
Alignment:
Q  115 ggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcat 168  Q
    |||||||||| |||||| ||||||||||| |||||||||  |||||||||||||    
T  36192129 ggtattttcggaagtttcgttggaagcgagcaatttttgtaaagagaagagcat 36192076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 15106400 - 15106443
Alignment:
Q  79 gagttaactcatgcggcgtgacttaaatcacgcatgggtatttt 122  Q
    ||||||||||||||  |||||||||| |||||||||||||||||    
T  15106400 gagttaactcatgctccgtgacttaagtcacgcatgggtatttt 15106443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 7633992 - 7634033
Alignment:
Q  63 ggtttataacctgcgcgagttaactcatgcggcgtgacttaa 104  Q
    ||||||||||||||| ||||||||| |||| |||||||||||    
T  7633992 ggtttataacctgcgtgagttaacttatgctgcgtgacttaa 7634033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 25994602 - 25994561
Alignment:
Q  73 ctgcgcgagttaactcatgcggcgtgacttaaatcacgcatg 114  Q
    ||||| ||||||||||| |||||||||||||| |||||||||    
T  25994602 ctgcgtgagttaactcaggcggcgtgacttaagtcacgcatg 25994561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 38810137 - 38810082
Alignment:
Q  99 acttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttga 154  Q
    |||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  38810137 acttaactcacgcatgggtattttcgaaagttaggttgggagcgaacaatttttga 38810082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 42448741 - 42448819
Alignment:
Q  95 cgtgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattc 173  Q
    |||||||||| | ||||||||||||||| | |||||||||||| ||||| |||||||| ||  |||| ||||| |||||    
T  42448741 cgtgacttaagttacgcatgggtatttttggaagtttggttgggagcgagcaattttttatgggagacgagcagaattc 42448819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 32464940 - 32464864
Alignment:
Q  97 tgacttaaatcacgcatgggtattttcgaaagtttggttggaagcgaccaatttttgataagagaagagcataattc 173  Q
    |||||||| ||||||| | ||||||| | ||||||| |||| ||||| |||||||| || | |||||||||||||||    
T  32464940 tgacttaagtcacgcaggagtatttttggaagtttgattgggagcgaacaattttttatgaaagaagagcataattc 32464864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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