View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10100_high_7 (Length: 261)

Name: NF10100_high_7
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10100_high_7
NF10100_high_7
[»] chr5 (15 HSPs)
chr5 (17-254)||(41365839-41366076)
chr5 (31-240)||(41323762-41323971)
chr5 (53-252)||(41327682-41327881)
chr5 (31-245)||(41285761-41285975)
chr5 (47-254)||(41321759-41321966)
chr5 (118-240)||(41359599-41359724)
chr5 (31-240)||(41331673-41331882)
chr5 (47-249)||(41315709-41315911)
chr5 (45-241)||(41369273-41369469)
chr5 (31-254)||(31188975-31189198)
chr5 (45-254)||(31185455-31185664)
chr5 (31-254)||(31178927-31179150)
chr5 (31-245)||(41336602-41336816)
chr5 (31-235)||(31224612-31224819)
chr5 (17-104)||(41358671-41358758)
[»] chr4 (1 HSPs)
chr4 (56-240)||(17249677-17249861)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 41365839 - 41366076
Alignment:
Q  17 aaaacattgagcgctaacaattccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgc 116  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41365839 aaaacattgagcgctaacaactccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgagttcattgc 41365938  T
Q  117 cccatcaccacctcaaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41365939 cccatcaccacctcaaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgc 41366038  T
Q  217 caaagagattatgaaaacacatgatatcaacttctgtg 254  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41366039 caaagagattatgaaaacacatgatatcaacttctgtg 41366076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 41323762 - 41323971
Alignment:
Q  31 taacaattccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctc 130  Q
    ||||||||||| |  ||| || |||||||||||||||  | | ||||||||||||||| ||||||||||||| |   | |||||||||||||||| | ||    
T  41323762 taacaattccactaccaaattgccacctggaccatgggaactacccctcataggaaacttacatcagattatcagcagatcattgccccatcaccgcttc 41323861  T
Q  131 aaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatga 230  Q
    ||||  ||||| ||  |||||||||| ||||||||||| ||  |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41323862 aaaattttggctgataaatatggacctttaatgcaccttaaactaggagaggtaccatacataatagttagttcaccagaaattgccaaagagattatga 41323961  T
Q  231 aaacacatga 240  Q
    ||||||||||    
T  41323962 aaacacatga 41323971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 53 - 252
Target Start/End: Original strand, 41327682 - 41327881
Alignment:
Q  53 ccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctcaaaaaattggcagaggaatatg 152  Q
    ||||| |||||||||| | | ||||||||||||||| ||||||||||||| |   | |||||||||||||| | | ||||||  ||||||||  ||||||    
T  41327682 ccaccaggaccatggaaactacccctcataggaaacttacatcagattatcagcagatcattgccccatcatctcttcaaaattttggcagataaatatg 41327781  T
Q  153 gacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatgaaaacacatgatatcaacttctg 252  Q
    ||||  |||||||||| ||  |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41327782 gacctctaatgcaccttaaactaggagaggtaccatacgtaatagttagttcaccagaaattgccaaagagattatgaaaacacatgatctcaacttctg 41327881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 245
Target Start/End: Original strand, 41285761 - 41285975
Alignment:
Q  31 taacaattccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctc 130  Q
    ||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |   | ||| ||||||||||   | ||    
T  41285761 taacagttccactatcaatttaccacctggaccatggacactgcccctcataggaaatatacatcatattattagtagctcactgccccatcattgcttc 41285860  T
Q  131 aaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatga 230  Q
    ||||  |||| |||| ||||||||||  | |||||| ||||  |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  41285861 aaaattttggaagagaaatatggacctctgatgcacttaaaactaggagaggtgccttacataatagttagttcaccagaaatggccaaagagattatga 41285960  T
Q  231 aaacacatgatatca 245  Q
    |||||||||| ||||    
T  41285961 aaacacatgacatca 41285975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 41321759 - 41321966
Alignment:
Q  47 aatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctcaaaaaattggcagagg 146  Q
    ||||| ||||| |||||||||| | | ||| ||||||||||| ||||||||||||| |   | |||||||||||||| | | ||||||  ||||||||      
T  41321759 aatttgccaccaggaccatggaaactacccttcataggaaacttacatcagattatcagcagatcattgccccatcatctcttcaaaattttggcagata 41321858  T
Q  147 aatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatgaaaacacatgatatcaa 246  Q
    ||||||||||  |||||||||| ||  |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41321859 aatatggacctctaatgcaccttaaactaggagaggtaccatacgtaatagttagttcaccagaaattgccaaagagattatgaaaacacatgatctcaa 41321958  T
Q  247 cttctgtg 254  Q
    ||| ||||    
T  41321959 cttttgtg 41321966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 41359599 - 41359724
Alignment:
Q  118 ccatcaccacctcaaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtga---ggtaccttacataatagttagttcaccagaaatt 214  Q
    |||||||||||| ||||| ||||| ||| ||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||    
T  41359599 ccatcaccacctaaaaaatttggctgagaaatatggactcttaatgcacctaaagttaggtgatcaggtaccttacataatagttagtccaccagaaatt 41359698  T
Q  215 gccaaagagattatgaaaacacatga 240  Q
    ||||||||||||||||||||||||||    
T  41359699 gccaaagagattatgaaaacacatga 41359724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 41331673 - 41331882
Alignment:
Q  31 taacaattccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctc 130  Q
    ||||||||||| |  ||| || ||||| |||||||||| | | ||||||||||||||| ||||||||||||| |   | |||||||||||||||| | ||    
T  41331673 taacaattccactaccaaattgccaccaggaccatggaaactacccctcataggaaacttacatcagattatcagcagatcattgccccatcacctcttc 41331772  T
Q  131 aaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatga 230  Q
    ||||| ||||||||  |||||||||| || |||||||| ||  |||| |||||||| ||  |||||||||||||||||||||| || |||||| ||||||    
T  41331773 aaaaagttggcagaaaaatatggacctttgatgcaccttaaactaggagaggtaccatatgtaatagttagttcaccagaaatggcaaaagaggttatga 41331872  T
Q  231 aaacacatga 240  Q
    ||||||||||    
T  41331873 aaacacatga 41331882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 41315709 - 41315911
Alignment:
Q  47 aatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctcaaaaaattggcagagg 146  Q
    ||||| ||||| |||||||||| | | ||| ||||||||||| ||||||||||||| |   | ||||||||||||||||   | |||   ||||||||      
T  41315709 aatttgccaccaggaccatggaaactacccttcataggaaacttacatcagattatcagcagatcattgccccatcaccgttttaaatttttggcagata 41315808  T
Q  147 aatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatgaaaacacatgatatcaa 246  Q
    ||||||||||||| ||| |||| || ||||| | ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41315809 aatatggacccttgatgtacctgaaattaggaggggtgccatacgtaatagttagttcaccagaaattgccaaagagattatgaaaacacatgatctcaa 41315908  T
Q  247 ctt 249  Q
    |||    
T  41315909 ctt 41315911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 45 - 241
Target Start/End: Original strand, 41369273 - 41369469
Alignment:
Q  45 tcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctcaaaaaattggcaga 144  Q
    ||||||||||||| || ||||||||| ||||||||| |||||| |||||||| ||||| |   | ||| ||||||||||   | ||||||| |||||| |    
T  41369273 tcaatttaccaccagggccatggacactgcccctcacaggaaatatacatcaaattattagtagctcactgccccatcattgcttcaaaaatttggcaaa 41369372  T
Q  145 ggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatgaaaacacatgat 241  Q
    | ||||||||||||||||||| |||||  |||| ||| || | | |||||||||||||||||||||||| |||||||||||| | ||||||||||||    
T  41369373 gaaatatggacccttaatgcatctaaaactaggagagatatcatgcataatagttagttcaccagaaatggccaaagagattctaaaaacacatgat 41369469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 31 - 254
Target Start/End: Complemental strand, 31189198 - 31188975
Alignment:
Q  31 taacaattccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctc 130  Q
    ||||||||||| | ||||||||||||| |||||||||||| | ||| ||||||||||||| |||||  |||| |     |||||||| |||||   | ||    
T  31189198 taacaattccagtatcaatttaccaccaggaccatggacactacccatcataggaaacatgcatcaacttattagcaactcattgcctcatcaatgcttc 31189099  T
Q  131 aaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatga 230  Q
    ||||| || || ||   ||||||||||||||||||||||||  |||| |||||| | ||| |||||||||||||||||  ||| ||||||||||||||||    
T  31189098 aaaaatttagctgatacatatggacccttaatgcacctaaaactaggagaggtatcatacctaatagttagttcaccatcaatggccaaagagattatga 31188999  T
Q  231 aaacacatgatatcaacttctgtg 254  Q
    ||||||||||  ||||||| ||||    
T  31188998 aaacacatgacctcaacttttgtg 31188975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 254
Target Start/End: Complemental strand, 31185664 - 31185455
Alignment:
Q  45 tcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctcaaaaaattggcaga 144  Q
    ||||||||||||  |||||| ||||| | ||| ||||||||||||||||||| ||||| |     |||||||| |||||   | ||||||| || || ||    
T  31185664 tcaatttaccacaaggaccacggacactacccatcataggaaacatacatcaaattattagaaactcattgcctcatcagtgcttcaaaaatttagctga 31185565  T
Q  145 ggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatgaaaacacatgatatc 244  Q
      |||||||||||||||||||||||||  |||| |||||| | ||| |||||||||||||||||  ||| ||||||||||||||||||||||||||  ||    
T  31185564 aaaatatggacccttaatgcacctaaaactaggagaggtatcatacctaatagttagttcaccatcaatggccaaagagattatgaaaacacatgacctc 31185465  T
Q  245 aacttctgtg 254  Q
    ||||| ||||    
T  31185464 aacttttgtg 31185455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 254
Target Start/End: Complemental strand, 31179150 - 31178927
Alignment:
Q  31 taacaattccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctc 130  Q
    ||||||||||| | ||||||||||||| |||||||||||| | ||| |||||||||||||||||||  |||| |     ||||| |  |||||   | ||    
T  31179150 taacaattccagtatcaatttaccaccaggaccatggacactacccgtcataggaaacatacatcaagttattagtaactcattacttcatcagtgcttc 31179051  T
Q  131 aaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatga 230  Q
    | ||| ||||| ||  ||||||||||||||||| ||||||| ||||| || ||  | |||||||||||||||||||||  ||| ||||||||||||||||    
T  31179050 agaaatttggctgaaaaatatggacccttaatgtacctaaaattaggagaagtgtcatacataatagttagttcaccatcaatggccaaagagattatga 31178951  T
Q  231 aaacacatgatatcaacttctgtg 254  Q
    ||||||||||  ||||||| ||||    
T  31178950 aaacacatgacctcaacttttgtg 31178927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 245
Target Start/End: Original strand, 41336602 - 41336816
Alignment:
Q  31 taacaattccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctc 130  Q
    ||||||||||| |  ||| || ||||| |||||||||| | | |||||||||||||||||||| |||||||      | |||   |||||||||| | ||    
T  41336602 taacaattccactaccaaattgccaccaggaccatggaaactacccctcataggaaacatacaccagattagtggcagctcacccccccatcacctcttc 41336701  T
Q  131 aaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatga 230  Q
    ||||||||||||||  |||||||||| || |||||||| ||  |||| |||||||| ||  || ||||||||||||||||||| || |||||||||||||    
T  41336702 aaaaaattggcagaaaaatatggacctttgatgcaccttaaactaggagaggtaccatatgtagtagttagttcaccagaaatggcaaaagagattatga 41336801  T
Q  231 aaacacatgatatca 245  Q
    |||||||||| ||||    
T  41336802 aaacacatgacatca 41336816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 31224612 - 31224819
Alignment:
Q  31 taacaattccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattat----aacgcgttcattgccccatcacca 126  Q
    ||||||||||| | ||||||||||||| |||||||||||| | ||| ||||||||||| ||||||| |||||    ||| |  | |||||| |||||  |    
T  31224612 taacaattccaatatcaatttaccaccaggaccatggacactacccatcataggaaacttacatcaaattattagcaactcaat-attgcctcatcagta 31224710  T
Q  127 cctcaaaaaattggcagaggaatatggacccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagatt 226  Q
    | | ||||| ||||| ||  |||||||||||||||||||| ||||  |||| |||||| | ||| |||||||||||||||||  ||| ||| ||||||||    
T  31224711 cttaaaaaatttggctgaaaaatatggacccttaatgcacttaaaactaggagaggtatcatacctaatagttagttcaccatcaatggcccaagagatt 31224810  T
Q  227 atgaaaaca 235  Q
    |||||||||    
T  31224811 atgaaaaca 31224819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 41358671 - 41358758
Alignment:
Q  17 aaaacattgagcgctaacaattccattgtcaatttaccacctggaccatggacaatgcccctcataggaaacatacatcagattataa 104  Q
    ||||||||||| ||||||||||| |  ||||| |||||||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  41358671 aaaacattgagtgctaacaattctaccgtcaacttaccacctggaccatggacaatgccccttgtaggaaacttacatcagattataa 41358758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 17249861 - 17249677
Alignment:
Q  56 cctggaccatggacaatgcccctcataggaaacatacatcagattataacgcgttcattgccccatcaccacctcaaaaaattggcagaggaatatggac 155  Q
    |||| |||||||||  ||||| | ||||||||||||||||| ||||| ||    ||| | ||||||||||   |||| |  ||||||||  |||||||||    
T  17249861 cctgcaccatggactttgccctttataggaaacatacatcaaattatcacttcctcacttccccatcaccggttcaagattttggcagataaatatggac 17249762  T
Q  156 ccttaatgcacctaaagttaggtgaggtaccttacataatagttagttcaccagaaattgccaaagagattatgaaaacacatga 240  Q
    |||||||||  |||||  |||| ||||||||  || |||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  17249761 ccttaatgctgctaaaactaggagaggtaccacacctaatagttagttcaccaacaatggccaaagagattatgaaaacacatga 17249677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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