View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10100_high_9 (Length: 250)
Name: NF10100_high_9
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 47213715 - 47213479
Alignment:
| Q |
1 |
ccaaaacagtatatgcaagctgtttttgctggaactgcttcctcaggtaaaattacaagacaattattatatatgttccctcatagttgatcaattttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47213715 |
ccaaaacagtatatgcaagctgtttttgctggaactgcttcctcaggtaaaattacaagacaattattatatatgttccctcatagttgatcaattttac |
47213616 |
T |
|
| Q |
101 |
tttcctttttacattactattgacaacaatgtcgttaggtaggagctataacgcgatatagcgcctagttagcaatgttgttaaatagcggctatggcac |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47213615 |
tttcctttttacattactatcgacaacaatgtcgttaggtaggagctataacgcgatatagcgcctagttagaaatgttgttaaatagcggctatggcac |
47213516 |
T |
|
| Q |
201 |
tgttgcataacagaatttgaacaaacttcaattttct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47213515 |
tgttgcataacagaatttgaacaaacttcaattttct |
47213479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 34925335 - 34925273
Alignment:
| Q |
174 |
aatgttgttaaatagcggctatggcactgttgcataacagaatttgaacaaacttcaattttc |
236 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||| ||||| ||||||||||||||||| | |||||| |
|
|
| T |
34925335 |
aatgttgtcaaatagcggctatagcattgtagcatagcagaatttgaacaaactgctattttc |
34925273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 24375760 - 24375811
Alignment:
| Q |
173 |
caatgttgttaaatagcggctatggcactgttgcataacagaatttgaacaaa |
225 |
Q |
| |
|
|||||||||||| |||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
24375760 |
caatgttgttaa-tagcggctatagcactattgcatagcagaatttgaacaaa |
24375811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 28726959 - 28727007
Alignment:
| Q |
178 |
ttgttaaatagcggctatggcactgttgcataacagaatttgaacaaac |
226 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| | |||||||||||||| |
|
|
| T |
28726959 |
ttgtgaaatagtggctatggcactgttgcatagcggaatttgaacaaac |
28727007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University