View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_11 (Length: 311)
Name: NF10100_low_11
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 37054664 - 37054351
Alignment:
| Q |
1 |
atgttgaacaacatgcttgtactttgacaaagactagtgacaataatgttagtagttcttttactaaggaaattgtttctgttcatgaagaaaaactagt |
100 |
Q |
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| T |
37054664 |
atgttgaacaacatgcttgtactttgacaaagactagtgacaataatgttagtagttcttttactaaggaaattgtttctgttcatgaagaagaactagt |
37054565 |
T |
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| Q |
101 |
aa---aaaatgaacatgaatgtgttgataaaattgttcatgaagattgtgattcatcagaagatgaaagctttcattcatttgttgattcacaatcaaat |
197 |
Q |
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| T |
37054564 |
aataaaaaatgaacatgaatgtgttgataaaattgttcatgaagattgtgattcatcagaagatgaaagctttcattcatttgttgattcacaatcaaat |
37054465 |
T |
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| Q |
198 |
acaagactttctaatgcttcagctggtagcctaagtgacacacaatctttgttattgtcaccgcaaaattcattttcattattaccaaaccaattaccta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37054464 |
acaagactttctaatgcttcagctggtagcctaagtgacacacaatctttgttattgtcacctcaaaattcattttcattattaccaaaccaattaccta |
37054365 |
T |
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| Q |
298 |
gttctccacaaaac |
311 |
Q |
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|||||||||||||| |
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| T |
37054364 |
gttctccacaaaac |
37054351 |
T |
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