View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10100_low_14 (Length: 287)
Name: NF10100_low_14
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_14 |
 | |
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| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 57175 - 57451
Alignment:
| Q |
1 |
caagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtatttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
57175 |
caagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaatgaattgctcataaccgtgccaatatgtatttt |
57274 |
T |
|
| Q |
101 |
tatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgca |
200 |
Q |
| |
|
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
57275 |
aatacccgaccaaaccgaggatttaaaataacgcatggagggctgaccgtttgagaaaaatcgcctcttgaataaattagaccactgtgtttcctgtgca |
57374 |
T |
|
| Q |
201 |
attatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
277 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
57375 |
attaaatcccaagataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
57451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 21879320 - 21879596
Alignment:
| Q |
1 |
caagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtatttt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |
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|
| T |
21879320 |
caagaggaacacctagccaattatcagtccaaaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgccaatatgaagttt |
21879419 |
T |
|
| Q |
101 |
tatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgca |
200 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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|
| T |
21879420 |
aatacccgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcttcttttgaataaattagaccactgtgtttcccgtgca |
21879519 |
T |
|
| Q |
201 |
attatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
277 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
21879520 |
attaaatcccaagataatttcagaattaaagcctcgttaatcaagcacgtatgtttgatgtctaacccaccttcatc |
21879596 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 1926127 - 1926403
Alignment:
| Q |
1 |
caagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtatttt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |
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|
| T |
1926127 |
caagaggaacacctagccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgccaatatgaagttt |
1926226 |
T |
|
| Q |
101 |
tatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgca |
200 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| | ||||| |
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|
| T |
1926227 |
aatacccgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgaaaaatatcgcctcttgaataaatgagaccactatgtttgccgtgca |
1926326 |
T |
|
| Q |
201 |
attatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
277 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1926327 |
attaaatcccaagataatttcagaattaaagcctcattaatcaagcgcgtagttttgatgtctaacccaccttcatc |
1926403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 21811768 - 21811492
Alignment:
| Q |
1 |
caagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtatttt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |
|
|
| T |
21811768 |
caagaggaacacctagccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgccaatatgaagttt |
21811669 |
T |
|
| Q |
101 |
tatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgca |
200 |
Q |
| |
|
||| | |||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||| ||||| | || |||||||||||||||| ||||| |
|
|
| T |
21811668 |
aatacccgaccaaacggatgatttaaaatagtgcatggagggctgaccgtttgagaaatatctccttttgaaaagatgagaccactgtgtttcccgtgca |
21811569 |
T |
|
| Q |
201 |
attatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
277 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
21811568 |
attaaatcccaagataatttcagaattaaagcctcattaatcaagcgcgtaggcatgaggtctaacccaccttcatc |
21811492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 108 - 275
Target Start/End: Original strand, 29304501 - 29304668
Alignment:
| Q |
108 |
gaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgcaattatat |
207 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||| | ||||||||| ||| |||| |||||||| ||||| || || || | |||||||| || |
|
|
| T |
29304501 |
gaccaaaccgaggatttaaaacagcgcttgctaggctgaccatgtgagaaataacgcatcttaaataaattcgaccattgagtatcttttgcaattaaat |
29304600 |
T |
|
| Q |
208 |
cccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttca |
275 |
Q |
| |
|
||||| | ||||| ||||| ||||||||||||||||| |||||||| ||||| || |||||||||||| |
|
|
| T |
29304601 |
cccaagaaaatttaagaatcaaagcctcgttaatcaaacgcgtaggcttgatatcaaacccaccttca |
29304668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 281
Target Start/End: Original strand, 41345427 - 41345599
Alignment:
| Q |
108 |
gaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgcaattatat |
207 |
Q |
| |
|
|||||||| |||||||||||||||||| || || ||||| | ||||||||| ||| |||| |||||||| ||||| || || || | |||||||| || |
|
|
| T |
41345427 |
gaccaaactgaggatttaaaatagcgcttgctagg-tgaccatgtgagaaataacgcatcttaaataaattcgaccattgagtatcttttgcaattaaat |
41345525 |
T |
|
| Q |
208 |
cccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatctcac |
281 |
Q |
| |
|
||||| | ||||| ||||| ||||| ||||||||||| |||||||| ||||| || |||||||||||| ||||| |
|
|
| T |
41345526 |
cccaagacaatttaagaatcaaagcttcgttaatcaaccgcgtaggcttgatatcaaacccaccttcagctcac |
41345599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 21041 - 21317
Alignment:
| Q |
1 |
caagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtatttt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||| |
|
|
| T |
21041 |
caagaggaacacctagccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaagaattgctcataaccgtgccaatatgaagttt |
21140 |
T |
|
| Q |
101 |
tatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgca |
200 |
Q |
| |
|
||| | |||||||| || |||||||||||| |||||||||||||||||||||| ||||||| ||| ||||| |||| |||||||| ||||| | ||||| |
|
|
| T |
21141 |
aatacccgaccaaacagaagatttaaaatagagcatggagggctgaccgtttgaaaaatatcacctattgaaaaaatgagaccactatgtttaccgtgca |
21240 |
T |
|
| Q |
201 |
attatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
277 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
21241 |
attaaatcccaagataatttcagaattaaagcctcattaatcaagcgcgtagaaatgaagtctaacccaccttcatc |
21317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 14626 - 14350
Alignment:
| Q |
1 |
caagaggaacacctaaccaattatcagtccagaaatgaatattgtttccatttcccacaatccacaaaatattcctcataaccgtgccaatatgtatttt |
100 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| |||||| ||||||| ||| |||||||||||| ||| |||| |||||||||||||| || ||| |
|
|
| T |
14626 |
caagaggatcatctaaccaattatcagtccagaaattaatattatttccatctccaacaatccacaaagaattgctcaaaaccgtgccaatatatacttt |
14527 |
T |
|
| Q |
101 |
tatatctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgca |
200 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |||||||||| ||||||||||||||||||||||| |
|
|
| T |
14526 |
aatgcccgaccaaaccgaggatttaaaatagcgcatggagggccgaccatttgagaaataaagctgcttgaataaactagaccactgtgtttcctgtgca |
14427 |
T |
|
| Q |
201 |
attatatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttcatc |
277 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
14426 |
attaaatcccaagataattttagaattaaagcctcattaatcaatcgcgtaggtctgatatctaacccaccttcatc |
14350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 275
Target Start/End: Complemental strand, 10137368 - 10137201
Alignment:
| Q |
108 |
gaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgtgcaattatat |
207 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||| ||||||| ||| ||| ||||||| |||||||| ||||| || | |||||||| || |
|
|
| T |
10137368 |
gaccaaaccgaggacttaaaatagcgctttcttggctgaccatttgagagataacgcaatctgaataagttagaccattgtgtatcttctgcaattaaat |
10137269 |
T |
|
| Q |
208 |
cccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttca |
275 |
Q |
| |
|
||||||| ||||| | ||| ||||| || |||||||| | |||||||||||||| || |||||||| |
|
|
| T |
10137268 |
cccaaaacaatttaataatcaaagcttcattaatcaaacatgtaggtttgatgtccaaaacaccttca |
10137201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 274
Target Start/End: Complemental strand, 20424952 - 20424785
Alignment:
| Q |
107 |
tgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgt-gcaattat |
205 |
Q |
| |
|
||||||||| || |||||||| ||||||| | |||| ||| ||||||||||| |||||||| || | |||||||| || || || ||| |||| || |
|
|
| T |
20424952 |
tgaccaaacagacgatttaaagtagcgcaagctaggcttaccatttgagaaataacgcctctttaaaaggttagaccattgagtatc-tgtagcaagtaa |
20424854 |
T |
|
| Q |
206 |
atcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttc |
274 |
Q |
| |
|
||||||| | |||| ||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
20424853 |
atcccaagaatatttaagaatcaaagcttcgttaatcaaacgcgtaggcttgatatccaacccaccttc |
20424785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 275
Target Start/End: Original strand, 10609885 - 10610054
Alignment:
| Q |
106 |
ctgaccaaaccgaggatttaaaatagcgcatggagggctgaccgtttgagaaatatcgcctcttgaataaattagaccactgtgtttcctgt-gcaatta |
204 |
Q |
| |
|
||||||||||||| || |||||||| |||| | |||| ||| |||| |||||| |||||||| || | |||||||| || || | |||| ||||||| |
|
|
| T |
10609885 |
ctgaccaaaccgaagacttaaaataacgcaagctaggcttaccatttgggaaataacgcctctttaaaaggttagaccattgagtat-ctgtagcaatta |
10609983 |
T |
|
| Q |
205 |
tatcccaaaataatttcagaattaaagcctcgttaatcaagcgcgtaggtttgatgtctaacccaccttca |
275 |
Q |
| |
|
||||||| | ||||| | ||| ||||| ||||||| ||| |||||||| ||||| || | |||||||||| |
|
|
| T |
10609984 |
aatcccaagacaatttaataatcaaagcttcgttaaacaaacgcgtaggcttgatatccagcccaccttca |
10610054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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