View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_16 (Length: 274)
Name: NF10100_low_16
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 43399599 - 43399872
Alignment:
| Q |
1 |
aagaacactacagaatgttactctatattatcaagaaaacaattttatgtagaattgaacattatgacatggtcacaatttctttcctttattctttgta |
100 |
Q |
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| T |
43399599 |
aagaacactacagaatgttactctatattatcaagaaaacaattttatgtagaattgaacattatgacatggtcacaatttctttcctttattctttgta |
43399698 |
T |
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| Q |
101 |
ctcgcaggtgaccaaaatagtgaaggaaatatggagcataaagttcgcgagagaaagtcaagctctacatctgaccgagaaactaccaatgcaagttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43399699 |
ctcgcaggtgaccaaaatagtgaaggaaatatggagcataaagttcgcgacagaaagtcaagctctacatctgaccgagaaactaccaatgcaagttcaa |
43399798 |
T |
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| Q |
201 |
aaacaaattccacggacgcaaaaggtatgttttgaacttatgatttggttaataggttccatttaaaatattct |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43399799 |
aaacaaattccacggacgcaaaaggtatgttttgaacttatgatttggttaataggttccatttaaaatattct |
43399872 |
T |
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