View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_17 (Length: 273)
Name: NF10100_low_17
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 37054805 - 37054917
Alignment:
| Q |
148 |
ctgcagaataagattaagccaagagaaataacaaatgcagcaactcctacagaaacaaaaacagctactagtattcttttggttctgcctctatcatcat |
247 |
Q |
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| T |
37054805 |
ctgcagaataagattaagccaagagaaataacaaatgcagcaactcctacagaaacaaaaacagctactagtattcttttggttctgcctctatcatcat |
37054904 |
T |
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| Q |
248 |
gatgaagcttttt |
260 |
Q |
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||||||||||||| |
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| T |
37054905 |
gatgaagcttttt |
37054917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 37054658 - 37054763
Alignment:
| Q |
1 |
tcaacatcttcacctaatgcatcaagatagaacagatctagtcctggatttaaactcaccttgccttttgtttttcctttggtattgctgctgcaaagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37054658 |
tcaacatcttcacctaatgcatcaagatagaacagatctagtcctggatttaaactcaccttgccttttgtttttcctttggtattgctgctgcaaagag |
37054757 |
T |
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| Q |
101 |
gcattg |
106 |
Q |
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|||||| |
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| T |
37054758 |
gcattg |
37054763 |
T |
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