View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10100_low_18 (Length: 270)

Name: NF10100_low_18
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10100_low_18
NF10100_low_18
[»] chr4 (2 HSPs)
chr4 (1-167)||(49234019-49234185)
chr4 (175-213)||(1688315-1688353)
[»] chr5 (1 HSPs)
chr5 (176-221)||(42825252-42825297)
[»] chr2 (3 HSPs)
chr2 (178-221)||(6666158-6666201)
chr2 (175-221)||(7497878-7497924)
chr2 (176-221)||(546273-546318)
[»] chr1 (5 HSPs)
chr1 (175-221)||(33422106-33422152)
chr1 (175-221)||(39220333-39220379)
chr1 (175-221)||(44112592-44112638)
chr1 (175-221)||(24775113-24775159)
chr1 (175-221)||(44641790-44641836)
[»] chr3 (3 HSPs)
chr3 (176-221)||(622347-622392)
chr3 (177-221)||(44334690-44334734)
chr3 (177-221)||(39932281-39932325)
[»] scaffold0238 (1 HSPs)
scaffold0238 (175-221)||(16529-16575)
[»] chr8 (2 HSPs)
chr8 (175-221)||(29910099-29910145)
chr8 (176-221)||(41304870-41304915)
[»] chr6 (1 HSPs)
chr6 (175-221)||(23633212-23633258)
[»] scaffold0111 (1 HSPs)
scaffold0111 (177-221)||(36757-36801)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 49234185 - 49234019
Alignment:
Q  1 taccctccattgtaacaataacacaaaccttaattatgctgaaatagggtgtacacaaaatagagcaaaatgtatatatgtcttaaatagtgatgaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49234185 taccctccattgtaacaataacacaaaccttaattatgctgaaatggggtgtacacaaaatagagcaaaatgtatatatgtcttaaatagtgatgaaact 49234086  T
Q  101 tggaaacaggatttttgaattgaatatgaaagccgctgatatttttgacgaatgttagacttcattc 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49234085 tggaaacaggatttttgaattgaatatgaaagccgctgatatttttgacgaatgttagacttcattc 49234019  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 1688315 - 1688353
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaatttt 213  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  1688315 aagagtagtgatatattgacaaccatttgtgacaatttt 1688353  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 42825297 - 42825252
Alignment:
Q  176 agagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  42825297 agagtagtgatatattgacaaccatttgtgacaattttgttgacaa 42825252  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 6666201 - 6666158
Alignment:
Q  178 agtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    ||||||| |||||||| |||||||||||||||||||||||||||    
T  6666201 agtagtgatatattgataatcatttgtgacaattttgttgacaa 6666158  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 7497878 - 7497924
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||    
T  7497878 aagagtagtgatatattgacaaccatttgtgacaactttgttgacaa 7497924  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 546273 - 546318
Alignment:
Q  176 agagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||    
T  546273 agagtagtgatatattgacaaccatttgtgacaactttgttgacaa 546318  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 33422106 - 33422152
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||    
T  33422106 aagagtagtgatatattgacaaccatttgtgacaactttgttgacaa 33422152  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 39220379 - 39220333
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||    
T  39220379 aagagtagtgatatattgacaaccatttgtgacaactttgttgacaa 39220333  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 44112638 - 44112592
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||    
T  44112638 aagagtagtgatatattgacaaccatttgtgacaactttgttgacaa 44112592  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 24775159 - 24775113
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||||| ||||||||||| ||||| |||||| |||||||||||    
T  24775159 aagagtagtgatatattgacaaccatttttgacaactttgttgacaa 24775113  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 44641790 - 44641836
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||||| ||||||||||| ||||||||| || |||||||||||    
T  44641790 aagagtagtgatatattgacaaccatttgtgataactttgttgacaa 44641836  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 622347 - 622392
Alignment:
Q  176 agagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||    
T  622347 agagtagtgatatattgacaaccatttgtgacaactttgttgacaa 622392  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 44334690 - 44334734
Alignment:
Q  177 gagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||| ||||||||||| |||||||||||| |||||||||||    
T  44334690 gagtagtgatatattgacaaccatttgtgacaactttgttgacaa 44334734  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 39932325 - 39932281
Alignment:
Q  177 gagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||| |||| |||||||||||| |||||| |||||||||||    
T  39932325 gagtagtgatatactgacaatcatttttgacaactttgttgacaa 39932281  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 16575 - 16529
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||||| ||||||||||| ||||| |||||| |||||||||||    
T  16575 aagagtagtgatatattgacaaccatttatgacaactttgttgacaa 16529  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 29910099 - 29910145
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||||||| ||||||||||| ||||| |||||| |||||||||||    
T  29910099 aagagtagtgatatattgacaaccatttttgacaactttgttgacaa 29910145  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 41304870 - 41304915
Alignment:
Q  176 agagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    ||||||||| |||||||||||  ||||||||||| |||||||||||    
T  41304870 agagtagtgatatattgacaacaatttgtgacaactttgttgacaa 41304915  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 23633212 - 23633258
Alignment:
Q  175 aagagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    |||||| ||| ||||||||||| ||||| ||||||||||||||||||    
T  23633212 aagagtggtgatatattgacaaccatttctgacaattttgttgacaa 23633258  T

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Target: scaffold0111 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 36757 - 36801
Alignment:
Q  177 gagtagtggtatattgacaatcatttgtgacaattttgttgacaa 221  Q
    ||||| || ||||||||||||||||| |||||| |||||||||||    
T  36757 gagtattgatatattgacaatcatttttgacaactttgttgacaa 36801  T

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