View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_19 (Length: 269)
Name: NF10100_low_19
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 49626446 - 49626195
Alignment:
| Q |
18 |
attatgatggtcgaaagtgttatggattatggagaattctaagtttatgaccgttggaatatttgttcggtgcatatctgatgcaagagtggtgtagata |
117 |
Q |
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| T |
49626446 |
attatgatggtcgaaagtgttatggattatggagaattctaagtttatgaccgttggaatatttgttcggtgcatatctgatgcaagagtggtgtagata |
49626347 |
T |
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| Q |
118 |
acaattgaactatgttggacgaaggttccattagtgtcaaagaagtggttgggcccccttgagattgacattctacccaatgtcaaacaagttttttaaa |
217 |
Q |
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| T |
49626346 |
acaattgaactatgttggacgaaggttccattagtgtcaaagaagtggttgggcccccttgagattgacattctacccaatgtcaaacaagttttttaaa |
49626247 |
T |
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| Q |
218 |
taccaatggcttgtgttagatgtttcgttggtaaaaaatatggagtatattt |
269 |
Q |
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| T |
49626246 |
taccaatggcttgtgttagatgtttcattggtaaaaaatatggagtatattt |
49626195 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 5105905 - 5105958
Alignment:
| Q |
22 |
tgatggtcgaaagtgttatggattatggagaattctaagtttatgaccgttgga |
75 |
Q |
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| T |
5105905 |
tgatggtcgaaggtgttataaattatggggaatcctaagtttatgaccgttgga |
5105958 |
T |
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