View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10100_low_2 (Length: 493)
Name: NF10100_low_2
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 9073832 - 9073365
Alignment:
| Q |
19 |
gtggtaattcttcttctcaaatttctcaagagagtgatatgtatcatcaaatgggatctatggctagtgcttctctttcacaagctttacaacaagaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9073832 |
gtggtaattcttcttctcaaatttctcaagagagtgatatttatcatcaaatgggatctatggctagtgcttctctttcacaagctttacaacaagaaag |
9073733 |
T |
|
| Q |
119 |
gtaccaagagaaacatcaaaagatgcaagctcaacaacagagtctaacagttcctattcaaattggaattgagcaggtaataaaatctttcctttgtctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9073732 |
gtaccaagagaaacatcaaaagatgcaagctcaacaacagagtctaacagttcctattcaaattggaattgagcaggtaataaaatctttcctttgtctt |
9073633 |
T |
|
| Q |
219 |
tgttcacctaaaatcttaattaattccaatttgaagttttttattccatccctaactgaataaattaacataatcaatagacaatctattataagatgta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9073632 |
tgttcacctaaaatcttaattaattccaatttgaagttttttatcccatccctaactgaataaattaacataatcaatagacaatctattataagatgta |
9073533 |
T |
|
| Q |
319 |
catccaaaaagagttcataaggtcatgcataacaatgtcgtgtcttctatgtctatggacgttgtatttatgatatcggttatgtcatccaaaaaggatt |
418 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
9073532 |
catccaaaaagagttcgtaaggtcatgcataataatgtcgtgtcttctatgtctatggacgttgtatttatgatattggttatgtcatccagaaaggatt |
9073433 |
T |
|
| Q |
419 |
actagcgcagcttattgcccgtctgccttcgatttttgtaataattatctaatacttgatgtccatct |
486 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||| | |||| |||||||| ||||| |
|
|
| T |
9073432 |
accagcgcagcttattgcccgcctgccttcgatttttgtaataattgtttaatgcttgatgtacatct |
9073365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 27521471 - 27521411
Alignment:
| Q |
328 |
agagttcataaggtcatgcataacaatgtcgtgtcttctatgtctatggacgttgtattta |
388 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||| ||||||| | ||||| |||| |
|
|
| T |
27521471 |
agagttcaaaaggtcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgttta |
27521411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 982949 - 982906
Alignment:
| Q |
328 |
agagttcataaggtcatgcataacaatgtcgtgtcttctatgtc |
371 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
982949 |
agagttcaaaaggtcatgcatatcaatgtcatgtcttctatgtc |
982906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 32312816 - 32312857
Alignment:
| Q |
326 |
aaagagttcataaggtcatgcataacaatgtcgtgtcttcta |
367 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
32312816 |
aaagagttcaaaaggtcatgcataacaatgtagtgtcttcta |
32312857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 13413351 - 13413263
Alignment:
| Q |
328 |
agagttcataaggtcatgcataacaatgtcgtgtcttctatgtctatggacgttgtatttatga-tatcggttatgtcatccaaaaagg |
415 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||| ||| ||| | ||||| ||||||| || |||| || |||||||||||| |
|
|
| T |
13413351 |
agagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttatgagaattggttttgccatccaaaaagg |
13413263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 17344638 - 17344578
Alignment:
| Q |
328 |
agagttcataaggtcatgcataacaatgtcgtgtcttctatgtctatggacgttgtattta |
388 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||| ||| ||| | ||||| |||| |
|
|
| T |
17344638 |
agagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta |
17344578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 32115720 - 32115658
Alignment:
| Q |
326 |
aaagagttcataaggtcatgcataacaatgtcgtgtcttctatgtctatggacgttgtattta |
388 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| ||| ||| ||| | ||||| |||| |
|
|
| T |
32115720 |
aaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgttta |
32115658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 38146056 - 38145996
Alignment:
| Q |
328 |
agagttcataaggtcatgcataacaatgtcgtgtcttctatgtctatggacgttgtattta |
388 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||| ||| ||| ||| ||||||| |||| |
|
|
| T |
38146056 |
agagttcaaagggtcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgttta |
38145996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University