View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_21 (Length: 250)
Name: NF10100_low_21
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 28 - 242
Target Start/End: Complemental strand, 31153973 - 31153759
Alignment:
| Q |
28 |
ggtcacaatggacgtgccttatacaaatataaatatcctaaatatatgaatgtattgtatgttacaccttatttactctaattggaattgcttgcaaggg |
127 |
Q |
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| T |
31153973 |
ggtcacaatggacgtgccttatacaaatataaatatcctaaatatatgaatgtattgtatgttacaccttatttactctaattggaattgctcgcaaggg |
31153874 |
T |
|
| Q |
128 |
ttgatcaatatctctatctccattttccagtttccaatcaaaggaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggcattcca |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31153873 |
ttgatcaatatctctatctccattttccagtttccaatcaaaggaattaatcaatgatcctaacattgtatgcaacattctaatagcaagtggcattcca |
31153774 |
T |
|
| Q |
228 |
ggacatattcatctc |
242 |
Q |
| |
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|||||||||| |||| |
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| T |
31153773 |
ggacatattcttctc |
31153759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 31135061 - 31135280
Alignment:
| Q |
28 |
ggtcacaatggacgtgccttatacaaatataaatatcctaaatatatgaatgtattgt------atgttacaccttatttactctaattggaattgcttg |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31135061 |
ggtcacaatggacgtgccttatacaaatataaatatcctaa-tgtatgaatgtattgtatttgtatgttacaccttatttactctaattggaattgcttg |
31135159 |
T |
|
| Q |
122 |
caagggttgatcaatatctctatctccattttccagtttccaatcaaaggaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggc |
221 |
Q |
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| T |
31135160 |
caagggttgatcaatatctctatctccattttccagtttccaatcaaaggaattaatcaatgatcctaacattgtatgcaacattctaatagcaagtggc |
31135259 |
T |
|
| Q |
222 |
attccaggacatattcatctc |
242 |
Q |
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|||||||||||||||| |||| |
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| T |
31135260 |
attccaggacatattcttctc |
31135280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 31131776 - 31131644
Alignment:
| Q |
110 |
tggaattgcttgcaagggttgatcaatatctctatctccattttccagtttccaatcaaaggaattaatcaatgatcctaacatagtatgcaacattcta |
209 |
Q |
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|||||| ||| |||| |||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31131776 |
tggaatagctcgcaaaggttgaccaatatcactatctccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattcta |
31131677 |
T |
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| Q |
210 |
atagcaagtggcattccaggacatattcatctc |
242 |
Q |
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|||||||||||||| ||||||||||||| |||| |
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| T |
31131676 |
atagcaagtggcatgccaggacatattcttctc |
31131644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 80 - 242
Target Start/End: Original strand, 24466901 - 24467063
Alignment:
| Q |
80 |
tattgtatgttacaccttatttactctaattggaattgcttgcaagggttgatcaatatctctatctccattttccagtttccaatcaaaggaattaatc |
179 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24466901 |
tattatatgttacaccttatttactctaactggaatagctcgcaagggttgattaatgtctctatctccattttccagtttccaatcaaagaaattaatc |
24467000 |
T |
|
| Q |
180 |
aatgatcctaacatagtatgcaacattctaatagcaagtggcattccaggacatattcatctc |
242 |
Q |
| |
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|||||||||||||| |||| | |||| || ||||||||||||| ||||| ||||||| |||| |
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|
| T |
24467001 |
aatgatcctaacatcatatgtatcattttagtagcaagtggcatgccagggcatattcttctc |
24467063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 81 - 237
Target Start/End: Original strand, 24484009 - 24484165
Alignment:
| Q |
81 |
attgtatgttacaccttatttactctaattggaattgcttgcaagggttgatcaatatctctatctccattttccagtttccaatcaaaggaattaatca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||| || |||||| |||| ||||||||| |
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| T |
24484009 |
attgtatgttacaccttatttactctaaaaggaatagctcgcaagggttgatcaatatctctatcaccattttgtagcttccaagcaaaacaattaatca |
24484108 |
T |
|
| Q |
181 |
atgatcctaacatagtatgcaacattctaatagcaagtggcattccaggacatattc |
237 |
Q |
| |
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||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
24484109 |
atgatcctaacattgtatgtaacattcttatagcaagtggcattccaggacacattc |
24484165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 41143083 - 41143154
Alignment:
| Q |
149 |
attttccagtttccaatcaaaggaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtgg |
220 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| ||||||||| |
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| T |
41143083 |
attttcaagtttccaatcaaaggagttaatcaatgatcccaacatcaaatgcaacatcctaacagcaagtgg |
41143154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 41108476 - 41108405
Alignment:
| Q |
149 |
attttccagtttccaatcaaaggaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtgg |
220 |
Q |
| |
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|||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||| |||| ||||||||| |
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| T |
41108476 |
attttcaagtttccaatcaaaggagttgatcaatgatcccaacatcaaatgcaacatcctaacagcaagtgg |
41108405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 41129600 - 41129529
Alignment:
| Q |
149 |
attttccagtttccaatcaaaggaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtgg |
220 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||| ||||| ||| ||||| |||| ||||||||| |
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| T |
41129600 |
attttcaagtttccaatcaaaggagttaatcaatgatcccaacatcaaatgaaacatcctaacagcaagtgg |
41129529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 41118940 - 41119012
Alignment:
| Q |
148 |
cattttccagtttccaatcaaaggaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtgg |
220 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| ||||| ||| ||||| |||| ||||||||| |
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| T |
41118940 |
cattttcaagtttccaatcaaaggagttgatcaatgatcccaacatcaaatgtaacatcctaacagcaagtgg |
41119012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 18094142 - 18094074
Alignment:
| Q |
146 |
tccattttccagtttccaatcaaaggaattaatcaatgatcctaacatagtatgcaacattctaatagc |
214 |
Q |
| |
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||||| ||| ||||||||||||||| |||||||||| ||||| ||||| || |||||||||||||||| |
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| T |
18094142 |
tccatcttcaagtttccaatcaaagcaattaatcaaagatcccaacatcataggcaacattctaatagc |
18094074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 18104150 - 18104082
Alignment:
| Q |
146 |
tccattttccagtttccaatcaaaggaattaatcaatgatcctaacatagtatgcaacattctaatagc |
214 |
Q |
| |
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||||| ||| ||||||||||||||| |||||| ||| ||||| ||||| || |||| ||||||||||| |
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| T |
18104150 |
tccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaatattctaatagc |
18104082 |
T |
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