View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_25 (Length: 241)
Name: NF10100_low_25
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 31154234 - 31154029
Alignment:
| Q |
17 |
cagtcctcccctacaatcttatcgttgtttaattaatcaactaggccacattcattagatagcaatattataatttaccaaaaacaaataaaatagaaaa |
116 |
Q |
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| T |
31154234 |
cagtcctcccctacaatcttatcgttgtttaattaattaactaggccacattcattagatagcaatattataatttaccaaaaacaaataaaatagaaaa |
31154135 |
T |
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| Q |
117 |
tactattg-aagttattagaaaaatagcatgtatctcacaacacacacataaatattatctat-aattaatatatatctcgagtacaacaacttaaagta |
214 |
Q |
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| T |
31154134 |
tactattgaaagttattagaaaaatatcatgtatctcaca--acacacataaatattatctataaataaatatatatctcgagtacaacaacttaaagta |
31154037 |
T |
|
| Q |
215 |
acttggtc |
222 |
Q |
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|||||||| |
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| T |
31154036 |
acttggtc |
31154029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 31134901 - 31134949
Alignment:
| Q |
114 |
aaatactattgaagttattagaaaaatagcatgtatctcacaacacaca |
162 |
Q |
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||||||||| ||||||||||||||||| ||| ||||||||||||||| |
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| T |
31134901 |
aaatactatcaaagttattagaaaaatatcatacatctcacaacacaca |
31134949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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