View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_27 (Length: 239)
Name: NF10100_low_27
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 21202908 - 21203133
Alignment:
| Q |
1 |
gttgttctgtcctgtccttgagatattaacttgattataattgttatatgagtgttatatgatttttgcccctggaaaagaaaatgaaaactttttaatt |
100 |
Q |
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| T |
21202908 |
gttgttctgtcctgtccttgagatattaacttgattataattgttatatgagttttatatgatttttgcccctggaaaagaaaatgaaaactttttaatt |
21203007 |
T |
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| Q |
101 |
gtcaaaatcaatttatcacacatttatgatcaattttgagccctcaaaactagaa--acaccagtacacccaattgaataacacttttataggtttgaaa |
198 |
Q |
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| T |
21203008 |
gtcaaaatcaatttatcacacatttatgatcaattttgagccctcaaaactagaaacacaccagtacacccaattgaataacacttttataggtttgaaa |
21203107 |
T |
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| Q |
199 |
aaagtgataaattgcatgcagctatt |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
21203108 |
aaagtgataaattgcatgcagctatt |
21203133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 27259750 - 27259950
Alignment:
| Q |
17 |
cttgagatattaacttgattataattgttatatgagtgttatatgatttttgcccctggaaaagaaaatgaaaactttttaattgtcaaaatcaatttat |
116 |
Q |
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| T |
27259750 |
cttgagatattaacttgattataattgttatatgagtgttatatgatttttgcccctggaaaagaaaatgagaactttttaattgtcaaaatcaatttat |
27259849 |
T |
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| Q |
117 |
cacacatttatgatcaattttgagccctcaaaactagaaacaccagtacacccaattgaataacacttttataggtttgaaaaaagtgataaattgcatg |
216 |
Q |
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| T |
27259850 |
cacacatttatgatcaattttgagccctca-------aaacacgagtacacccaattgaataacacttttataggtttgtaaaaagtgataaattgcttg |
27259942 |
T |
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| Q |
217 |
cagctatt |
224 |
Q |
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||| |||| |
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| T |
27259943 |
cagatatt |
27259950 |
T |
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