View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_28 (Length: 239)
Name: NF10100_low_28
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_28 |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 7320 - 7527
Alignment:
| Q |
4 |
aatctttgataactctgtatttatcatattaaaatgtagttaggctcgactcaattttagaaaacaagattctaaaaacaattttttaaaattatcatat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
7320 |
aatctttgataactctgtatttatcatattaaaatgtagttaggctcgactcaattttagaaaacaagattctaaaaacaatttttttaaa-------at |
7412 |
T |
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| Q |
104 |
tataagtacgaagttttcactgtcgtttaacaattacttctctacttcagaaaatttgtaggctatacaaagtgaattttccctcttaaaaacatttact |
203 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
7413 |
tatcagtacgaagttttcagtgtcgtttaacaattacttctctacttcagaaaatttgtaggctatacaaagtggattttccctcttaaaaacacttact |
7512 |
T |
|
| Q |
204 |
aatatacatggtcaa |
218 |
Q |
| |
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||||||||||||||| |
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| T |
7513 |
aatatacatggtcaa |
7527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 11448 - 11241
Alignment:
| Q |
4 |
aatctttgataactctgtatttatcatattaaaatgtagttaggctcgactcaattttagaaaacaagattctaaaaacaattttttaaaattatcatat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
11448 |
aatctttgataactctgtatttatcatattaaaatgtagttaggctcgactcaattttagaaaacaagattctaaaaacaatttttttaaa-------at |
11356 |
T |
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| Q |
104 |
tataagtacgaagttttcactgtcgtttaacaattacttctctacttcagaaaatttgtaggctatacaaagtgaattttccctcttaaaaacatttact |
203 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
11355 |
tatcagtacgaagttttcagtgtcgtttaacaattacttctctacttcagaaaatttgtaggctatacaaagtggattttccctcttaaaaacacttact |
11256 |
T |
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| Q |
204 |
aatatacatggtcaa |
218 |
Q |
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||||||||||||||| |
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| T |
11255 |
aatatacatggtcaa |
11241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 17041422 - 17041629
Alignment:
| Q |
4 |
aatctttgataactctgtatttatcatattaaaatgtagttaggctcgactcaattttagaaaacaagattctaaaaacaattttttaaaattatcatat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
17041422 |
aatctttgataactctgtatttatcatattaaaatgtagttaggctcgactcaattttagaaaacaagattctaaaaacaatttttttaaa-------at |
17041514 |
T |
|
| Q |
104 |
tataagtacgaagttttcactgtcgtttaacaattacttctctacttcagaaaatttgtaggctatacaaagtgaattttccctcttaaaaacatttact |
203 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
17041515 |
tatcagtacgaagttttcagtgtcgtttaacaattacttctctacttcagaaaatttgtaggctatacaaagtggattttccctcttaaaaacacttact |
17041614 |
T |
|
| Q |
204 |
aatatacatggtcaa |
218 |
Q |
| |
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||||||||||||||| |
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| T |
17041615 |
aatatacatggtcaa |
17041629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 17045537 - 17045330
Alignment:
| Q |
4 |
aatctttgataactctgtatttatcatattaaaatgtagttaggctcgactcaattttagaaaacaagattctaaaaacaattttttaaaattatcatat |
103 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
17045537 |
aatctttgataactctgtatttatcatattaaaatgtagttaggctcgactcaattttagaaaacaagattctaaaaacaatttttttaaa-------at |
17045445 |
T |
|
| Q |
104 |
tataagtacgaagttttcactgtcgtttaacaattacttctctacttcagaaaatttgtaggctatacaaagtgaattttccctcttaaaaacatttact |
203 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
17045444 |
tatcagtacgaagttttcagtgtcgtttaacaattacttctctacttcagaaaatttgtaggctatacaaagtggattttccctcttaaaaacacttact |
17045345 |
T |
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| Q |
204 |
aatatacatggtcaa |
218 |
Q |
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||||||||||||||| |
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| T |
17045344 |
aatatacatggtcaa |
17045330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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