View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_29 (Length: 237)
Name: NF10100_low_29
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_29 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 33631019 - 33631228
Alignment:
| Q |
29 |
tcaacacacaaaataataaaaaagaccattgaaaatgcatagtttggtcataagctaaataaagttaaccagatattgttata-gccaggattaaacttg |
127 |
Q |
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| T |
33631019 |
tcaacgcacaaaataataaaaaagaccattgaaaatgcatagtttggtcataagctaaataaagttaaccagatattgttataagccaggattaaacttg |
33631118 |
T |
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| Q |
128 |
gataccacgagtttaattttcataatcgaacatctcaagtaggtagctagattggtgaactaggggaccataaagaaattttaagcaaaggaggtacaaa |
227 |
Q |
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| T |
33631119 |
gataccacgagtttaattttcataatcgaacatctcaagtaggtagctagattggtgaactaggggaccataaagaaattttaagcaaaggaggtacaaa |
33631218 |
T |
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| Q |
228 |
gttcaaaccc |
237 |
Q |
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| T |
33631219 |
gttcaaaccc |
33631228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 50947727 - 50947921
Alignment:
| Q |
42 |
taataaaaaagaccattgaaaatgcatagtttggtcataagctaaataaagttaaccagatattgttatagccaggattaaacttggata--ccacgagt |
139 |
Q |
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| T |
50947727 |
taataaaaatgaccattgaaaattcatagtttggtcataagctaaataa-gttaaccagatattgttatagcc-ggattaa-cttggatataccccgagt |
50947823 |
T |
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| Q |
140 |
ttaattttcataatcgaacatctcaagtaggtagctagattggtgaactaggggaccataaagaaattttaagcaaaggaggtacaaagttcaaaccc |
237 |
Q |
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| T |
50947824 |
ataatttgcataatcgaacgtctcaagtaggtagatagattggtgaaccaagggatcataaagaaactttaagcaaaggaggtgcagggttcaaaccc |
50947921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 15855407 - 15855578
Alignment:
| Q |
43 |
aataaaaaagaccattgaaaatgcatagtttggtcataagctaaataaagttaaccagatattgttatagccaggattaaacttggataccacgagttta |
142 |
Q |
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| T |
15855407 |
aataaaaaagaatattgaaaaatcatagtttggtcataagctaaataaaattagtcaaatattgttatagtttggatcaaacttggataccccgagtata |
15855506 |
T |
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| Q |
143 |
attttcataatcgaacatctcaagtaggtagctagattggtgaactaggggaccataaagaaattttaagcaa |
215 |
Q |
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| T |
15855507 |
a-ttgcataattgaacgtcgcaagtagttagctaggttggtgaacaaggggaccataaagaaactttaagcaa |
15855578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 50957081 - 50957260
Alignment:
| Q |
27 |
tttcaacacacaaaataataaaaaagaccattgaaaatgcatagtttggtcataagctaaataaagttaaccagatattgttatagccaggattaaactt |
126 |
Q |
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| T |
50957081 |
tttcaacaaaaaaaataataaaaaagaacattgaaaattc-ttgtttggttggaagctaaataaagttacccagatattgttacagtcgaaatcaaactt |
50957179 |
T |
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| Q |
127 |
ggataccacgagtttaattttcataatcgaacatctcaagtaggtagctagattggtgaactaggggaccataaagaaatt |
207 |
Q |
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| T |
50957180 |
gggtgaccctagtataatttgcataatcgaatgtctcaagtaggtttctagattggtgaaccaagggactataaagaaatt |
50957260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 50963977 - 50964054
Alignment:
| Q |
56 |
attgaaaatgcatagtttggtcataagctaaataaagttaaccagatattgttatagccaggattaaacttggatacc |
133 |
Q |
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| T |
50963977 |
attgaaaattcatagtttggttggaagctaaaaaaagttagccagatgttgttatagttaggatcgaacttggatacc |
50964054 |
T |
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