View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_3 (Length: 460)
Name: NF10100_low_3
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 20427747 - 20427310
Alignment:
| Q |
18 |
atccccaaactgatggacaaactgaagtgg--------tgcttagaaacctatcttaggtgccttacaggaacaaaaccgaaacagtggcctaagtggtt |
109 |
Q |
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| T |
20427747 |
atccccaaactgatggacaaactgaagtggccaaccggtgcttagaaacctatcttaggtgccttacaggaacaaaaccgaaacagtggcgtaagtggtt |
20427648 |
T |
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| Q |
110 |
aggatgggttgaattatggtttaacaccaactataatagttctctgaagcagactcctttcaaatccctttatggtcgagatccaccacacctactcaaa |
209 |
Q |
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| T |
20427647 |
aggatgggctgacttctggtttaacaccaactataatagttctctgaagcagactcctttcaaaaccctttatggtcgagatccaccactcctactcaaa |
20427548 |
T |
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| Q |
210 |
ggcaccactattccatctttggtagaagaagttaatgttctaaccgacgaaagagatcaaattctccatgacttgaagcaaaatcttgtgaaagctcagg |
309 |
Q |
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| T |
20427547 |
ggcaccactattccatctttggtagaagaagttaatgttctaaccgacgaaagagatcaaattctccatgacttgaagcaaaatctggtgaaagctctgg |
20427448 |
T |
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| Q |
310 |
agcagatgaaagcatatgctgataaatcaaggagatcagttaatttcactaatggagattgggtttacttgaaacttcaaccttacagattgaagtctct |
409 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20427447 |
agcagatgaaagcatatgctgataagtcaaggagatcagttaatttcactaatggagattgggtttacttgaaactacaaccttacagattgaagtctct |
20427348 |
T |
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| Q |
410 |
tgcaaagaaaagaaatgagaaactgaatccccgtttct |
447 |
Q |
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| T |
20427347 |
tgcaaagaaaagaaatgagaaactgaatcaccgtttct |
20427310 |
T |
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