View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_30 (Length: 237)
Name: NF10100_low_30
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 1351158 - 1351351
Alignment:
| Q |
26 |
ttgcatttccacctaattcattctcatctttaccaaaattatgcacaatcagtacatctttgcaagaaatatttttgacagaaattatgaactgaatatc |
125 |
Q |
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| T |
1351158 |
ttgcatttccacctaattcattctcatctttaccaaaattatgcacaatcagtacatctttgcaagaaatatttttgacagaaattatgaactgaatatc |
1351257 |
T |
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| Q |
126 |
gccggcgctccaaaaagcaatccgcggtctcaaactcatcttcatacgctaaattttgggccttagcttttactggttgggaattgcaattcct |
219 |
Q |
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| T |
1351258 |
gctggcgctccaaaaagcaatccgcggtctcaaactcatcttcatacgctaaattttaggccttagcttttactggttgggaattgcaattcct |
1351351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 1359035 - 1359186
Alignment:
| Q |
29 |
catttccacctaattcattctcatctttaccaaaattatgcacaatcagtacatctttgcaagaaatatttttga-cagaaattatgaactgaatatcgc |
127 |
Q |
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| T |
1359035 |
catttccagataattctttctcattttcaccaaaattatgcacaatcagtacatctttacaagaaacttttttgagcagaaattatgaactgcatatcgt |
1359134 |
T |
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| Q |
128 |
cggcgctccaaaaagcaatccgcggtctcaaactcatcttcatacgctaaat |
179 |
Q |
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| T |
1359135 |
tgacgctccaaaaagcaatccacggtctcaaagttattttcatacgctaaat |
1359186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 1391874 - 1391940
Alignment:
| Q |
129 |
ggcgctccaaaaagcaatccgcggtctcaaactcatcttcatacgctaaattttgggccttagcttt |
195 |
Q |
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| T |
1391874 |
ggcgctccaaaaagcaatccacagtctcaaagtcatctttatacgctaaatattcggccttagcttt |
1391940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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