View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_32 (Length: 227)
Name: NF10100_low_32
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_32 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33631637 - 33631411
Alignment:
| Q |
1 |
atgataagacagtatgaaaaaccagaaaagagcaatgacatataacagtatgcaaattacacaaaaacaataattaataaagccaactagagatagcata |
100 |
Q |
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| T |
33631637 |
atgataagacagtatgaaaaaccagaaaagagcaatgaattataacagtatgcaaattacacaaaaacaataattaataaagccaactagagatagcata |
33631538 |
T |
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| Q |
101 |
gtctctaaaagctagcaaacacacaaactcacgaattcacaaaaccaagtctccgtcaacctcaaaaaacacttgctactttgaatttaaccagtcttgc |
200 |
Q |
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| T |
33631537 |
gtctctaaaagctagcaaacacacaaactcacgaattcacgaaaccaagtctccgtaaacctcaaaaaacacttgctactttgaatttaaccagtcttgc |
33631438 |
T |
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| Q |
201 |
tgcaagcaccggagccacaacaacacc |
227 |
Q |
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| T |
33631437 |
tgcaagcaccggagccacaacaacacc |
33631411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 50948357 - 50948236
Alignment:
| Q |
1 |
atgataagacagtatgaaaaaccagaaaagagcaatgacatataacagtatgcaaattacacaaaaacaataattaataaagccaactagagatagcata |
100 |
Q |
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||||||||||||||||||||||| ||||||||||| || || |||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
50948357 |
atgataagacagtatgaaaaacctgaaaagagcaaagaaatggaacagtctgcaaattacacaaa--caatatttaatacagccaactagagatagcata |
50948260 |
T |
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| Q |
101 |
gtctctaaaagctagcaaacacac |
124 |
Q |
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| T |
50948259 |
gtctctaaaagctggcaaacacac |
50948236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 50948210 - 50948104
Alignment:
| Q |
125 |
aaactcacgaattcacaaaaccaagtctccgtcaacctcaaaaaacacttgctactttgaatttaaccagtc----ttgctgcaagcaccggagccacaa |
220 |
Q |
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|||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||||| |
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| T |
50948210 |
aaacacacaaattcacgaaaccaattctccgtcaacctcaaaaaacacttgctactttgaatgtaaccagtcttaattgctgcaagctctagagccacaa |
50948111 |
T |
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| Q |
221 |
caacacc |
227 |
Q |
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||||||| |
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| T |
50948110 |
caacacc |
50948104 |
T |
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