View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_33 (Length: 227)
Name: NF10100_low_33
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_33 |
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| [»] scaffold0037 (3 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6891 - 7115
Alignment:
| Q |
1 |
gtggtggaggcaggggttatgagacatgagagtcagtagtgggtttgtttacttaggtagtggttttagggtaatattatattatctatatataaaccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6891 |
gtggtggaggcaggggttatgagacatgagagtcagtagtgggtttgtttacttaggtagtggttttagggtaatattatattatctatatataaaccca |
6990 |
T |
|
| Q |
101 |
cccacaccaactcaacactcactccaacccttcgcgttgnnnnnnnnnnnnnnnnaatattggtcgaccgacttcaccgctaaaagcttaaaagattaac |
200 |
Q |
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|||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||| || |||||||||| |||||||||||| |
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| T |
6991 |
cccacatcaactcaacactcactccaacccttcgccttgtttttatttattttttcatatttgtcgaccgactccatcgctaaaagcctaaaagattaac |
7090 |
T |
|
| Q |
201 |
cagttccgatatttatacatagcgg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
7091 |
cagttccgatatttatacatagcgg |
7115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 11877 - 11653
Alignment:
| Q |
1 |
gtggtggaggcaggggttatgagacatgagagtcagtagtgggtttgtttacttaggtagtggttttagggtaatattatattatctatatataaaccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11877 |
gtggtggaggcaggggttatgagacatgagagtcagtagtgggtttgtttacttaggtagtggttttagggtaatattatattatctatatataaaccca |
11778 |
T |
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| Q |
101 |
cccacaccaactcaacactcactccaacccttcgcgttgnnnnnnnnnnnnnnnnaatattggtcgaccgacttcaccgctaaaagcttaaaagattaac |
200 |
Q |
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| T |
11777 |
cccacatcaactcaacactcactccaacccttcgccttgtttttatttattttttcatatttgtcgaccgactccatcgctaaaagcctaaaagattaac |
11678 |
T |
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| Q |
201 |
cagttccgatatttatacatagcgg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
11677 |
cagttccgatatttatacatagcgg |
11653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5460 - 5529
Alignment:
| Q |
1 |
gtggtggaggcaggggttatgagacatgagagtcagtagtgggtttgtttacttaggtagtggttttagg |
70 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5460 |
gtggtggaggcaggggttatgaaacatgagagtcagtagtgggtttgtttacttaggtagtggttttagg |
5529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17040993 - 17041217
Alignment:
| Q |
1 |
gtggtggaggcaggggttatgagacatgagagtcagtagtgggtttgtttacttaggtagtggttttagggtaatattatattatctatatataaaccca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17040993 |
gtggtggaggcaggggttatgagacatgagagtcagtagtgggtttgtttacttaggtagtggttttagggtaatattatattatctatatataaaccca |
17041092 |
T |
|
| Q |
101 |
cccacaccaactcaacactcactccaacccttcgcgttgnnnnnnnnnnnnnnnnaatattggtcgaccgacttcaccgctaaaagcttaaaagattaac |
200 |
Q |
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|||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||| || |||||||||| |||||||||||| |
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| T |
17041093 |
cccacatcaactcaacactcactccaacccttcgccttgtttttatttattttttcatatttgtcgaccgactccatcgctaaaagcctaaaagattaac |
17041192 |
T |
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| Q |
201 |
cagttccgatatttatacatagcgg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
17041193 |
cagttccgatatttatacatagcgg |
17041217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 17045898 - 17045746
Alignment:
| Q |
66 |
ttagggtaatattatattatctatatataaacccacccacaccaactcaacactcactccaacccttcgcgttgnnnnnnnnnnnnnnnnaatattggtc |
165 |
Q |
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| T |
17045898 |
ttagggtaatattatattatctatatataaacccacccacaccaactcaacactcactccaacccttcgccttgtttttatttattttttaatattggtc |
17045799 |
T |
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| Q |
166 |
gaccgacttcaccgctaaaagcttaaaagattaaccagttccgatatttatac |
218 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17045798 |
gaccgactccaccgctaaaagcctaaaagattaaccagttccgatatttatac |
17045746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17047217 - 17047148
Alignment:
| Q |
1 |
gtggtggaggcaggggttatgagacatgagagtcagtagtgggtttgtttacttaggtagtggttttagg |
70 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17047217 |
gtggtggaggcaggggttatgaaacatgagagtcagtagtgggtttgtttacttaggtagtggttttagg |
17047148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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