View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_34 (Length: 222)
Name: NF10100_low_34
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47213984 - 47213763
Alignment:
| Q |
1 |
cttatatggtttcatctgtgcttgtacttcttgtgatgatgagttggggaggttggagtaaaacaacactgaggttgagaatgaatttaggattttcaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47213984 |
cttatatggtttcatctgtgcttgtacttcttgtgatgatgagttggggaggttggagtaaaacaacactgaggttgagaatgaacttaggattttcaat |
47213885 |
T |
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| Q |
101 |
gtttgttatgtctctcatggtagctcctgtcattgattgggcctcgagtagggacgagatgaaagagaggccaagcggtgcttatggcatgacagttgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47213884 |
gtttgttatgtctctcatggtagctcctgtcattgattgggcctcgagtagggacgagatgaaagagaggccaagcggtgcttatggcatgacagttgca |
47213785 |
T |
|
| Q |
201 |
gctgttgtaatatgtggtttag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
47213784 |
gctgttgtaatatgtggtttag |
47213763 |
T |
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