View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_35 (Length: 217)
Name: NF10100_low_35
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_35 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 12505414 - 12505198
Alignment:
| Q |
1 |
aagtaaacctttgataagtgcatggtttggttcagttgtgtctaagaaaggacagacacggtagcctccggtgaagtctatcgatggcatgaaggtacca |
100 |
Q |
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| T |
12505414 |
aagtaaacctttgataagtgcatggtttggttcagttgtgtctaagaaaggacagacacggtagcctccagtgaagtctatcgatggcatgaaggtacca |
12505315 |
T |
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| Q |
101 |
tcgaagacattgtatttctcgacttttttgttgtcgaagaggatcggaaacgatgaagcatctaagagtgctatgactcttgggtttgaggaaatgaatg |
200 |
Q |
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| T |
12505314 |
tcgaagacattgtatttctcgacttttttgttgtcgaagaggatcggaaacgatgaagcatctaagagtgctatgactcttgggtttgaggaaatgaatg |
12505215 |
T |
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| Q |
201 |
gacctggtggcatgttg |
217 |
Q |
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| T |
12505214 |
gacctggtggcatgttg |
12505198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 12490865 - 12490653
Alignment:
| Q |
5 |
aaacctttgataagtgcatggtttggttcagttgtgtctaagaaaggacagacacggtagcctccggtgaagtctatcgatggcatgaaggtaccatcga |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||||| || |||||||| | | |||| |||||||| || || |||| |
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| T |
12490865 |
aaacctttgataagtgcatggtttggttcagttgtgtctaggtaagcacatacacggtaaccaccggtgaattttgtcgacggcatgaatgtgccgtcga |
12490766 |
T |
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| Q |
105 |
agacattgtatttctcgacttttttgttgtcgaagaggatcggaaacgatgaagcatctaagagtgctatgactcttgggtttgaggaaatgaatggacc |
204 |
Q |
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| T |
12490765 |
ggacgttgagtttttcgacttttttgttgtcgaagagtatcgggaaagatgcggcgtctaagagtgctatgactcttgggtttgaggaaatgaagggacc |
12490666 |
T |
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| Q |
205 |
tggtggcatgttg |
217 |
Q |
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| T |
12490665 |
tggtggcatgttg |
12490653 |
T |
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