View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10100_low_4 (Length: 458)
Name: NF10100_low_4
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Original strand, 30517487 - 30517909
Alignment:
| Q |
11 |
caaaggaaaaatttgcttaatgagtttcggttaaggacggattgtttgggataccaagagttcaaatgcagaggaacgatattttatcagactttactta |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
30517487 |
caaagaaaaaatttgcttaatgagtttcggttaaggacggattgtttgggttaccaagagttcaaatgcaaaggaacga----------gactttactta |
30517576 |
T |
|
| Q |
111 |
tctc--aactcaaccctttgtgagaatgagaagtctatgaaaaaagattagagctaagaaaagtcaaaatgggagtaagcagtaacatgagtacggcata |
208 |
Q |
| |
|
|||| | || ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30517577 |
tctctcagctgaaccctttgtgagaatgagaagtctatgacaaaagattagagctaacaaaagtcaaaatgggagtaagcagtaacatgagtacggcata |
30517676 |
T |
|
| Q |
209 |
aggatttgtacaaacaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataatactcaaatatatatctttagtga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30517677 |
aggatttgtacaaacaagcctatatatagtggttggttaacaacctcaaactagtgtcaaaataaaacaaaaataatactcaaatatatatctatagtga |
30517776 |
T |
|
| Q |
309 |
gtgaggttaactgagataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatcgaaaaacttgtgtcttaattaatctttga |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
30517777 |
gtgaggttaactgagataactccaaaccatggattttgtcgtttagggcaaaaactgcaaaaaggcttatc-aaaaacttgtgtgttaattaatctttga |
30517875 |
T |
|
| Q |
409 |
tcaactccttaataatttgtttgaactaattaac |
442 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
30517876 |
tcaactccttcataatttgtttgaactaattaac |
30517909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University