View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_5 (Length: 419)
Name: NF10100_low_5
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 40513053 - 40513431
Alignment:
| Q |
18 |
agaacagacacagtagtgtaaactgcattggttgaagtttaaattaaaggaggtgtaatattatgcatggaaccaattgaccaacctcttcttcatatgc |
117 |
Q |
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| T |
40513053 |
agaacacacacagtagtgtaaactgcattggttgaagtttaaattaaaggaggtgtaatattatgcatggaaccaattgaccaacctcttcttcatatgc |
40513152 |
T |
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| Q |
118 |
cttcaatgccatatttgttttgataaaaccaggtgtgacgattgtaatgccaatggaccaaccaagttcaattcttagagtctcaaagaagcttattgtc |
217 |
Q |
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| T |
40513153 |
cttcaatgccatatttgttttgataaaaccaggtgtgacgattgtaatgccaatggaccaaccaagttcaattcttagagtctcaaagaagcttattgtc |
40513252 |
T |
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| Q |
218 |
gcagccttactagcctgataccataacgtatataatcacagtttaagactattattttggctcataaacaaattgaaaagtaaattaaaataaaattgaa |
317 |
Q |
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| T |
40513253 |
gcagccttactagcctgataccataa---------------tgtaagactattattttggctcataaacaaattgaaaagtaaattaaaataaaattgaa |
40513337 |
T |
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| Q |
318 |
atgaactaatgtctatgtttacattatagatacttaatcttggaagtgggaaccatccacagcccgaagcaaccactatgatcctgcctttgct |
411 |
Q |
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| T |
40513338 |
atgaactaatgtctatgtttacattatagatacttaatcttggaagtgggaaccatccacagcccgaagcaaccactatgatcctgcctttgct |
40513431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 40527060 - 40527170
Alignment:
| Q |
133 |
tgttttgataaaaccaggtgtgacg---attgtaatgccaatggaccaaccaagttcaattcttagagtctcaaagaagc---ttattgtcgcagcctta |
226 |
Q |
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| T |
40527060 |
tgttttgataaaaccaggtgtggtggctattgttatgccaatagaccaaccaagttcaattcttaaagtctcaaagaagcttattattatcgctgcctta |
40527159 |
T |
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| Q |
227 |
ctagcctgata |
237 |
Q |
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||||||||||| |
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| T |
40527160 |
ctagcctgata |
40527170 |
T |
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