View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_7 (Length: 380)
Name: NF10100_low_7
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 372
Target Start/End: Original strand, 1036039 - 1036384
Alignment:
| Q |
17 |
aaacaacatgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcg |
116 |
Q |
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| T |
1036039 |
aaacaacatgcaaatacattattttgttaccagcaaatgggttaggtaaccaaataattaccgcggcttcatcatttctttacgcgatgctaacggatcg |
1036138 |
T |
|
| Q |
117 |
cgttatgcctgtacaatttgggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggat |
216 |
Q |
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| T |
1036139 |
cgttat----------tttgggaaagacaaagaaggtttattttgtgaaccatttttgaattcaacttggttgttaccaaacgactctcctttttgggat |
1036228 |
T |
|
| Q |
217 |
gcaaacgatgttaaaacatatcaaagcacaattgagatggagattatgtctaatgcattgaatgaagatttaccatcaacaatgtatgtggatctaagat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036229 |
gcaaacgatgttaaaacatatcaaagcacaattgagatggagattatgtctaatacattgaatgaagatttaccatcaacaatgtatgtggatctaagat |
1036328 |
T |
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| Q |
317 |
atagtggtacatctgatgagagattttttcactgtgaccacagtcaatttcttctc |
372 |
Q |
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| T |
1036329 |
atagtggtacatctgatgagagattttttcactgtgaccacagtcaatttcttctc |
1036384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 1010990 - 1011207
Alignment:
| Q |
25 |
tgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttatgc |
124 |
Q |
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| T |
1010990 |
tgcaaataccttatttggacaccagctaatggtttaggaaaccaaatggttagcatggctgcaacatttatgtatgctctcctcacaaaccgtgttatgc |
1011089 |
T |
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| Q |
125 |
ctgtacaatttgggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggatgcaaacga |
224 |
Q |
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||| ||| ||||||||||| ||||| |||||||||| || ||||| ||||||||||||||||||||| | || |||||||||||| ||| ||| | |
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| T |
1011090 |
tcgtaagattcaggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttaccagaaaagtctcctttttggaatgaaaatca |
1011189 |
T |
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| Q |
225 |
tgttaaaacatatcaaag |
242 |
Q |
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| T |
1011190 |
tgttgaaacatatcaaag |
1011207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 6938797 - 6938446
Alignment:
| Q |
18 |
aacaacatgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgc |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||| | ||||||| || |
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| T |
6938797 |
aacaacatgcaaatacattatttggttacctgcaaatggtttaggtaaccaaataattagcatggcttcatcatttctatatgcgctcctaacgggacgt |
6938698 |
T |
|
| Q |
118 |
gttatgcctgtacaatttgggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggatg |
217 |
Q |
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||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||| | || |||||||||||| ||| |
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| T |
6938697 |
gttatgctcgtacagtttggaaaagacaaagaaggtttattttgcgaaccatttctgaattcgacttggttgttaccagaaaaatctcctttttggaatg |
6938598 |
T |
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| Q |
218 |
caaacgatgttaaaacatatcaaagcacaattgagatggagattatgtctaatgcattgaatgaagatttaccatcaacaatgtatgtggatctaagata |
317 |
Q |
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|| | | ||| |||||||||||||||||||| |||||| | | ||||| |||| ||||||||||| |||||| || || ||||| || || |||| |
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| T |
6938597 |
cagaaaaagttcaaacatatcaaagcacaattaagatgg---gtggggctaatacattaaatgaagattttccatcagcattgcatgtgaatttaggata |
6938501 |
T |
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| Q |
318 |
tagtggtacatctgatgagagattttttcactgtgaccacagtcaatttcttctc |
372 |
Q |
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|||| |||||| || ||||||||||||||||||||||||| |||||||||||| |
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| T |
6938500 |
tagtcctacatcagaagagagattttttcactgtgaccacaaccaatttcttctc |
6938446 |
T |
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