View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_low_8 (Length: 353)
Name: NF10100_low_8
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 36902865 - 36903201
Alignment:
| Q |
16 |
acatgtttgtatatgttgatccatttgcnnnnnnncccacctcggagcagtatatcaaaagccttgtgccagaacacttacgtttgacaagcaacaacaa |
115 |
Q |
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| T |
36902865 |
acatgtttgtatatgttgatccatttgctttttttcccacctcggagcagtatatcaaaagccttgtgccagaacacttacatttgacaagcaacaacaa |
36902964 |
T |
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| Q |
116 |
aggcaaaacagctgaaaatatcttcaaggaatcacatgaaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36902965 |
aggcaaaacagctgaaaatatcttcaaggaatcacatgaaggtcttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgta |
36903064 |
T |
|
| Q |
216 |
gccgcgcttgtcgctggtgcttccttcaccacaacaagtgcagtacctggcggaacaactgagggtagaccagtattagaaggcaatcctgcattcaatg |
315 |
Q |
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| T |
36903065 |
gccgcgcttgtcgctggtgcttccttcaccacaacaagtgcagtacctggcggaacaactgagggtagaccagtattagaaggcaatcctgcattcaatg |
36903164 |
T |
|
| Q |
316 |
tcttcctctttgcttcgcatagtggcctttgcttctc |
352 |
Q |
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| T |
36903165 |
tcttcctctttgcttcgcttagtggcctttgtttctc |
36903201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 59 - 319
Target Start/End: Original strand, 36893103 - 36893366
Alignment:
| Q |
59 |
ggagcagtatatcaaaagccttgtgccagaacacttacgtttgacaagcaacaacaaaggcaaaacagctgaaaatatcttcaaggaatcacatgaaggt |
158 |
Q |
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| T |
36893103 |
ggagcagtacatcaaaagccttgtgccacaacacttcattttcagaaacaacagcagtggcaaaacatcaagagaaattttcaagaaaacacacaaaggt |
36893202 |
T |
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| Q |
159 |
cttataaaagacagcaatgaatggctaaaaaacacagcagattcctgctcggttgtagccgcgcttgtcgctggtgcttccttcaccacaacaagtgcag |
258 |
Q |
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| T |
36893203 |
cttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgcccttgtagctggtgtttcctttgccacagcaagcgctg |
36893302 |
T |
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| Q |
259 |
tacctggcggaacaactg---agggtagaccagtattagaaggcaatcctgcattcaatgtctt |
319 |
Q |
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|||||||||| ||||||| | |||||||| |||||||||||||| ||||||||| ||||||| |
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| T |
36893303 |
tacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgcattcgatgtctt |
36893366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 36883095 - 36883166
Alignment:
| Q |
54 |
acctcggagcagtatatcaaaagccttgtgccagaacacttacgtttgacaagcaacaacaaaggcaaaaca |
125 |
Q |
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|||| |||||||||||||||||||||||| ||| ||||||| || | |||||||||||| ||||||||| |
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| T |
36883095 |
accttggagcagtatatcaaaagccttgtaccacaacacttctactttagaagcaacaacaagggcaaaaca |
36883166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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