View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10101_high_10 (Length: 258)
Name: NF10101_high_10
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 4388584 - 4388830
Alignment:
| Q |
1 |
cttctatttcatcatcttcatctccgtctccatcttcaacttcatctccaactccatattcatcatacaaatcagcaatcacatcatgcagggatttcag |
100 |
Q |
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| T |
4388584 |
cttccatttcatcatcttcatcttcgtctccatcttcaacttcatctccaactccatattcatcatacaaataagcaatcacatcatgtagggatttcag |
4388683 |
T |
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| Q |
101 |
atttggagtaccttcaatgtttccattatccttcagattttgaactagctcaacaaaccatctagctttctcttcagccaattttgaattagccatgaca |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4388684 |
atttggagtaccttcaatgcttccattatccttcagattttgaactagctcaacaaaccatctggctttctcttcagccaattttgaattagccatgaca |
4388783 |
T |
|
| Q |
201 |
tagacaacatcattataagttttttgccacaaaaggtttctgttctt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4388784 |
tagacaacatcattataagttttttgccacaaaaggtttctgttctt |
4388830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 4375903 - 4376122
Alignment:
| Q |
14 |
atcttcatctccgtctccatcttcaacttcatctccaactccatattcatcatacaaatcagcaatcacatcatgcagggatttcagatttggagtacct |
113 |
Q |
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| T |
4375903 |
atcttcatctttgtctctatcttgaacttcatctccaactccatattcatcatacaaatcagcaatcacgtcatgtagagacttaagatatggagtacct |
4376002 |
T |
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| Q |
114 |
tcaatgtttccattatccttcagattttgaactagctcaacaaaccatctagctttctcttcagccaattttgaattagccatgacatagacaacatcat |
213 |
Q |
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| T |
4376003 |
tcactgtttccattatccttcagattttgaagtagctcaataaaccatcttgctttgtcttcagccaattttgaattagccatgacaaagagagaatcat |
4376102 |
T |
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| Q |
214 |
tataagttttttgccacaaa |
233 |
Q |
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||||| | |||||||||||| |
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| T |
4376103 |
tataaatattttgccacaaa |
4376122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 4383492 - 4383701
Alignment:
| Q |
14 |
atcttcatctccgtctccatcttcaacttcatctccaactccatattcatcatacaaatcagcaatcacatcatgcagggatttcagatttggagtacct |
113 |
Q |
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|||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | | || || |||| | ||||| || |
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| T |
4383492 |
atcttcatcttcgtctccatcttcatcttcgtctccaactccatattcatcatacaaatcagcaatcacatcacgttgagactttagatatcgagtagct |
4383591 |
T |
|
| Q |
114 |
tcaatgtttccattatccttcagattttgaactagctcaacaaaccatctagctttctcttcagccaattttgaattagccatgacatagacaacatcat |
213 |
Q |
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| T |
4383592 |
tcaatttttccatt------------------tcgccaaacaacccttctagctttctctacagccaattttgaattagccatgacaaagacagcatcat |
4383673 |
T |
|
| Q |
214 |
tataagttttttgccacaaaaggtttct |
241 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
4383674 |
tataagccttttgccacaaaaggtttct |
4383701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 4359124 - 4359168
Alignment:
| Q |
168 |
ttctcttcagccaattttgaattagccatgacatagacaacatca |
212 |
Q |
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|||| ||| |||||||||||||||||||||||| | ||||||||| |
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| T |
4359124 |
ttcttttcggccaattttgaattagccatgacaaaaacaacatca |
4359168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 3596268 - 3596040
Alignment:
| Q |
14 |
atcttcatctccgtctccatcttcaact-tcatctccaactccatattcatcatacaaatcagcaatcacatcatgcagggatttcagatttggagtacc |
112 |
Q |
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|||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||| |
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| T |
3596268 |
atcttcatcttcatcttcatcttcaactctcatctccaactccatattcatcatacaaatcagcaatcacatcatgtagagacttcagatatggagtacc |
3596169 |
T |
|
| Q |
113 |
ttcaatgtttccattatccttcagattttgaactagctcaacaaaccatctagctttctcttcagccaattttgaattagccatgacatagacaacatca |
212 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3596168 |
atcaatgtttccattatccttcagattttgaattcgctcaacaaaccatctagctttctcttcagccaattttgaattagccatgacaaagacaacatca |
3596069 |
T |
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| Q |
213 |
ttataagttttttgccacaaaaggtttct |
241 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3596068 |
ttataagttttttgccacaaaaggtttct |
3596040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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