View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10101_high_15 (Length: 242)
Name: NF10101_high_15
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_high_15 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 48453512 - 48453276
Alignment:
| Q |
8 |
tggacatcatcttttctggattttaaacatcctacaagtttctcctcttctgcagaaactttcggttatggtgagcgaacatggttaatgcacacctttt |
107 |
Q |
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| T |
48453512 |
tggacatcatcttttctggattttaaacatcctacaagtttctcctcttttgcagaaacttttggttatggtgagcgaacatggttaatgcacacctttt |
48453413 |
T |
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| Q |
108 |
attattattattttttgtggttatcatcctgactttgagcaagaactttgtaaattaagttatacatttgatccttctt--cnnnnnnnnnnnggttata |
205 |
Q |
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| T |
48453412 |
attattattattttttgtggttatcatcctgactttgagcaagaacttcgtaaattaagttatacatttgatacttctttaaaaaaaaaaaaaggttata |
48453313 |
T |
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| Q |
206 |
cttttgagctggagaatcatgcaatcaagatcgttgc |
242 |
Q |
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| T |
48453312 |
cttttgagctggagaatcatgcaatcaagatcgttgc |
48453276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 47929059 - 47929131
Alignment:
| Q |
17 |
tcttttctggattttaaacatcctacaagtttctcctcttctgcagaaactttcggttatggtgagcgaacat |
89 |
Q |
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| T |
47929059 |
tcttttgtggattttaaacatccttcaagcttctcctcttctgcagaaactctctgtcatggtgagtgaacat |
47929131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 47051406 - 47051333
Alignment:
| Q |
17 |
tcttttctggattttaaacatcctacaagtttctcctcttctgcagaaactttcggttatggtgagcgaacatg |
90 |
Q |
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| T |
47051406 |
tcttttgtggattttaaacatgcttcaagcttctcctcttttgcagaaactttcaatcatggtgagtgaacatg |
47051333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 48107571 - 48107506
Alignment:
| Q |
24 |
tggattttaaacatcctacaagtttctcctcttctgcagaaactttcggttatggtgagcgaacat |
89 |
Q |
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| T |
48107571 |
tggattttaaacatccttcaagtttgtccttttttgcagaaactttcagccatggtgagtgaacat |
48107506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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