View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10101_high_16 (Length: 240)
Name: NF10101_high_16
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_high_16 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 4665161 - 4665384
Alignment:
| Q |
17 |
acattggatgtagcaattgcacaaatcagaaaaattaataaattttaaggtgggattgtttcaaggttaccacagacagttctagaaaaatgaggttaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4665161 |
acattggatgtagcaattgcacaaatcagaaaaattaataaattttatggtgggattgtttcaaggttaccacagacatttctagaaaaatgaggttaga |
4665260 |
T |
|
| Q |
117 |
aatataatattatcatattccgtacaagtttataaaaattaattgttttcgaaaattaattattctgaaaaataaaacacaccttgccaactttcctagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4665261 |
aatataatattatcatattccgtacaagtttataaaaattaattgttttcgaaaattatttattctgaaaaataaaacacaccttaccaactttcctagg |
4665360 |
T |
|
| Q |
217 |
aatatcaagattttaccaaacact |
240 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4665361 |
aatatcaagattttaccaaacact |
4665384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University