View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10101_low_1 (Length: 823)

Name: NF10101_low_1
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10101_low_1
NF10101_low_1
[»] chr5 (2 HSPs)
chr5 (1-805)||(10790423-10791217)
chr5 (676-725)||(16016352-16016401)
[»] chr6 (3 HSPs)
chr6 (676-732)||(26491952-26492008)
chr6 (669-742)||(281757-281830)
chr6 (676-732)||(32171302-32171358)
[»] chr2 (3 HSPs)
chr2 (670-734)||(22878187-22878251)
chr2 (670-738)||(21279962-21280030)
chr2 (670-732)||(30331841-30331902)
[»] chr1 (2 HSPs)
chr1 (676-735)||(48748511-48748570)
chr1 (669-732)||(37241740-37241802)
[»] chr8 (3 HSPs)
chr8 (705-738)||(5088244-5088277)
chr8 (676-725)||(27465446-27465495)
chr8 (687-732)||(41475031-41475076)
[»] chr3 (1 HSPs)
chr3 (676-725)||(2923573-2923622)


Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 805
Target Start/End: Original strand, 10790423 - 10791217
Alignment:
Q  1 aaagggaaacagtagagttacataagcagtctataagttctagtattcttgttaatacttttctttacactaaagacctgtttaaaattaaaacaaagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  10790423 aaagggaaacagtagagttacataagcagtctataagttctagtatccttgttaatacttttctttacactaaagacatgtttaaaattacaacaaagga 10790522  T
Q  101 agaaagacttcaaaaagctcgatttataaattttgaataatgttacatagcaacatgatgtatgccattgtgctgttagcattatattgcacctatacca 200  Q
    |||||||||||||||||||||| |||                   || |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10790523 agaaagacttcaaaaagctcgaatta-------------------cacagcaacatgatgtatgccattgtgctgttagcattatattgcacctatacct 10790603  T
Q  201 gtaggctttgcccaccttgctcgaagccagtcaccgccatacatttcaagttatacaccgtttaaggttttgagacgtgaattaagaaattgcagctaag 300  Q
    ||||||||||| ||||||||||||||||||||||| |||| | ||||||||| ||||| |||||||||||||| | ||||||||||||||||||| ||||    
T  10790604 gtaggctttgcgcaccttgctcgaagccagtcaccaccattcgtttcaagttttacactgtttaaggttttgacatgtgaattaagaaattgcaggtaag 10790703  T
Q  301 aagcttacactgattggacctaacaatgaagctctctttctggagtatacacaactacgcaagtctatatgaagtataaagtgatttgatttaatgggat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||| |||||||||| ||    
T  10790704 aagcttacactgattggacctaacaatgaagctctctttctggagtatatgcaactatgcaagtctatatgaagtataaagtgattcgatttaatggcat 10790803  T
Q  401 tgactttttcttcctttctgctcagcattcatttgagaaatctgtcatttctaaaataacagaaaaaaccaaaagagcaatattag---------ttctt 491  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||         |||||    
T  10790804 tgactttttctttctttctgctcagcattcatttgagaaatccatcatttctaaaataacagaaaaaaccaaaagagcaatattagttcttcaaattctt 10790903  T
Q  492 caaataagtcaacataaggtttagcagacagcatatgaaaagtttcaagaagaaataagtcaacttcctccatcattgatagactgggaaacaagttttc 591  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||   |||||||||||||    
T  10790904 caaataagtcaacctaaggtttagcagacagcatttgaaaagtttcaagaagaaataagtcaacttcttctatcattgatagaccaagaaacaagttttc 10791003  T
Q  592 aaagatgtcacagaatcacaaaacttttataacccaatttacttcaaatg-aaacctacttataacaaacttgctgctctctcctaaacagtctcgcaag 690  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||   | ||||||||||||||| ||||    
T  10791004 aaagatatcacagaatcacaaaacttttataacccaatttacttcaaatgaaaacatacttataacaaacttgctaggcactcctaaacagtctcacaag 10791103  T
Q  691 tacttatgtcaattgataagctgaaataagtcaattcaaacataccctaagtgagatgctattagccttggaaagtgaggaaaaatctgttcaacaataa 790  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | ||| |||||||||| ||||||||||| |||||||||| ||    
T  10791104 tacttatgtcaattgataagctgaaataagtcaattcaaacagaccctaactgagatccgatttgccttggaaaatgaggaaaaatttgttcaacaa-aa 10791202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 725
Target Start/End: Complemental strand, 16016401 - 16016352
Alignment:
Q  676 aaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaat 725  Q
    |||||||||  ||||| ||||||||| |||||||||| ||||||||||||    
T  16016401 aaacagtctgacaagtgcttatgtcatttgataagctcaaataagtcaat 16016352  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 676 - 732
Target Start/End: Original strand, 26491952 - 26492008
Alignment:
Q  676 aaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaattcaaaca 732  Q
    |||| ||||||||||||||||||||||||||||  || |||| ||||||||||||||    
T  26491952 aaaccgtctcgcaagtacttatgtcaattgatagactcaaatgagtcaattcaaaca 26492008  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 669 - 742
Target Start/End: Complemental strand, 281830 - 281757
Alignment:
Q  669 ctctcctaaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaattcaaacataccctaagt 742  Q
    |||||| |||||||||| ||||||||||||||| |  |||| || || ||||||||| |||||| |||||||||    
T  281830 ctctcccaaacagtctcacaagtacttatgtcactacataatctcaagtaagtcaatccaaacagaccctaagt 281757  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 676 - 732
Target Start/End: Complemental strand, 32171358 - 32171302
Alignment:
Q  676 aaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaattcaaaca 732  Q
    |||||||||||||||| |||||||||||   |||||||||||||| |||| ||||||    
T  32171358 aaacagtctcgcaagtgcttatgtcaatacttaagctgaaataagacaatccaaaca 32171302  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 670 - 734
Target Start/End: Original strand, 22878187 - 22878251
Alignment:
Q  670 tctcctaaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaattcaaacata 734  Q
    ||||| |||||||||| ||||| ||||||||| | |||||||| |||||||||||| ||||||||    
T  22878187 tctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaacata 22878251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 670 - 738
Target Start/End: Complemental strand, 21280030 - 21279962
Alignment:
Q  670 tctcctaaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaattcaaacataccct 738  Q
    ||||| ||||||||||| ||||| ||||||||   ||||| || ||||||||||||||||||| |||||    
T  21280030 tctcccaaacagtctcgtaagtatttatgtcagccgataaactcaaataagtcaattcaaacaaaccct 21279962  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 670 - 732
Target Start/End: Original strand, 30331841 - 30331902
Alignment:
Q  670 tctcctaaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaattcaaaca 732  Q
    ||||| |||||||||| |||  |||||||||| | ||||||||||||||||||||| ||||||    
T  30331841 tctcccaaacagtctcacaaa-acttatgtcagtagataagctgaaataagtcaatccaaaca 30331902  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 676 - 735
Target Start/End: Complemental strand, 48748570 - 48748511
Alignment:
Q  676 aaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaattcaaacatac 735  Q
    ||||| |||| |||||  |||||||||| |||||||| ||||||||||||||||||||||    
T  48748570 aaacaatctcacaagtgtttatgtcaatggataagctcaaataagtcaattcaaacatac 48748511  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 732
Target Start/End: Complemental strand, 37241802 - 37241740
Alignment:
Q  669 ctctcctaaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaattcaaaca 732  Q
    |||||||||||| |||||||||| |||||| || | |||||||| |||||||||||| ||||||    
T  37241802 ctctcctaaacaatctcgcaagtgcttatg-cagtagataagcttaaataagtcaatccaaaca 37241740  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 705 - 738
Target Start/End: Original strand, 5088244 - 5088277
Alignment:
Q  705 gataagctgaaataagtcaattcaaacataccct 738  Q
    ||||||||||||||||||||| ||||||||||||    
T  5088244 gataagctgaaataagtcaatccaaacataccct 5088277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 725
Target Start/End: Original strand, 27465446 - 27465495
Alignment:
Q  676 aaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaat 725  Q
    |||||||||||||||| |||||| |||| |||||| | ||||||||||||    
T  27465446 aaacagtctcgcaagtgcttatgccaatagataagttcaaataagtcaat 27465495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 732
Target Start/End: Complemental strand, 41475076 - 41475031
Alignment:
Q  687 caagtacttatgtcaattgataagctgaaataagtcaattcaaaca 732  Q
    |||||||||||||||||  ||||||| |||||||||||| ||||||    
T  41475076 caagtacttatgtcaatcaataagctcaaataagtcaatccaaaca 41475031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 725
Target Start/End: Original strand, 2923573 - 2923622
Alignment:
Q  676 aaacagtctcgcaagtacttatgtcaattgataagctgaaataagtcaat 725  Q
    |||||||||  ||||||||||||||||| ||||||||  |||||||||||    
T  2923573 aaacagtctttcaagtacttatgtcaatagataagctcgaataagtcaat 2923622  T

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