View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10101_low_11 (Length: 382)

Name: NF10101_low_11
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10101_low_11
NF10101_low_11
[»] chr8 (6 HSPs)
chr8 (39-366)||(38851133-38851457)
chr8 (213-366)||(38840622-38840771)
chr8 (280-366)||(38861297-38861383)
chr8 (268-367)||(38864743-38864842)
chr8 (212-253)||(38861137-38861178)
chr8 (322-366)||(38858465-38858509)


Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 39 - 366
Target Start/End: Complemental strand, 38851457 - 38851133
Alignment:
Q  39 aataaacttattataggtacaaaacatactagggtaatttatactaattagtttttt-gttttctttcattctttgctcaacacaatatatatgtattct 137  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38851457 aataaacttattataggtacaaagcatactagggtaatttatactatttagtttttttgttttctttcattctttgctcaacacaatatatatgtattct 38851358  T
Q  138 cttggttcaaaacttcaaataattaactacaccataatcttattagaaaaaatgaattaataacttcaactgaagtatttttacaattgaggtcaaagta 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38851357 cttggttcaaaacttcaaataattaactacaccataatcttattagaaaaaatgaattaataacttcaactgaagtatttttacaattaaggtcaaagta 38851258  T
Q  238 aagcaaagaaagtttctttctcaaacataattaattatcttatatttccctatagttacgctccaaagcttgaggttctagtggttggatcgttataata 337  Q
    ||||||| ||||| |||||||||| ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38851257 aagcaaataaagtctctttctcaacca----taattatcttatatttccctatagttacgctccaaagcttgaggttctagtggttggatagttataata 38851162  T
Q  338 gtttctggcactggcaacacaattggttg 366  Q
    |||||||||||||||||||||||||||||    
T  38851161 gtttctggcactggcaacacaattggttg 38851133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 213 - 366
Target Start/End: Original strand, 38840622 - 38840771
Alignment:
Q  213 tatttttacaattgaggtcaaagtaaagcaaagaaagtttctttctcaaacataattaattatcttatatttccctatagttacgctccaaagcttgagg 312  Q
    ||||| |||| ||||| |||||||||||||||||||||||||| ||||| ||||||    ||||||||||||||||||||||||| ||||||||||   |    
T  38840622 tatttctacatttgagatcaaagtaaagcaaagaaagtttcttgctcaaccataat----tatcttatatttccctatagttacgttccaaagcttcgtg 38840717  T
Q  313 ttctagtggttggatcgttataatagtttctggcactggcaacacaattggttg 366  Q
     |||||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  38840718 ctctagtggttcgatccttataataatttctggcactggcaacacaattggttg 38840771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 366
Target Start/End: Original strand, 38861297 - 38861383
Alignment:
Q  280 tatttccctatagttacgctccaaagcttgaggttctagtggttggatcgttataatagtttctggcactggcaacacaattggttg 366  Q
    |||||| ||||||||||| ||||||||||   | ||||||||||  ||| ||||||||||||||||||||||||||| |||||||||    
T  38861297 tatttctctatagttacgttccaaagcttcgtgctctagtggttctatccttataatagtttctggcactggcaacaaaattggttg 38861383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 38864743 - 38864842
Alignment:
Q  268 ttaattatcttatatttccctatagttacgctccaaagcttgaggttctagtggttggatcgttataatagtttctggcactggcaacacaattggttgt 367  Q
    |||||||  ||||||||| ||||||||||| |||||||||| | | || |||||||||||| ||||||  |||||| | |||||||  ||||||||||||    
T  38864743 ttaattagtttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatccttataacggtttctagtactggcataacaattggttgt 38864842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 38861137 - 38861178
Alignment:
Q  212 gtatttttacaattgaggtcaaagtaaagcaaagaaagtttc 253  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  38861137 gtatttttacatttgaggtcaaagtaaagcaaagaaagtttc 38861178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 38858465 - 38858509
Alignment:
Q  322 ttggatcgttataatagtttctggcactggcaacacaattggttg 366  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||    
T  38858465 ttggattgctataataatttctggcactggcaacacaattggttg 38858509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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