View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10101_low_12 (Length: 375)
Name: NF10101_low_12
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 11613291 - 11612923
Alignment:
| Q |
17 |
ataatcaatgacagcagtttgataaaattagccacaaatcgtacaaataaaaactgaaaagatagaacaaataaagtatctcaacaatggtaaccgtact |
116 |
Q |
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| T |
11613291 |
ataatcaatgacagcagtttgataaaattagccacaaatcgtacaaataaaaactgaaaagatagaacaaataaagtttctcaacaatggtaatcgtact |
11613192 |
T |
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| Q |
117 |
ctactgatttttgttttgttttaaccatatggttctcagaaagaaaaaa----------ggggttctggtaatccaaagttcggccagaaggtaagcaaa |
206 |
Q |
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| T |
11613191 |
ctactgatttttgttttgttttaaccatatagttctcagaaagaaaaaaaaaaaaaaaaggggttctggtaatccaaagttcggccagaaggtaagcaaa |
11613092 |
T |
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| Q |
207 |
gtctagccaaagattgtttaagtcagggatcgaactcaagtactcctcattgatccgaccgtaacttaaactcatcaaccacttggttatgctctactca |
306 |
Q |
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| T |
11613091 |
gtctagccaaagattgtttaagtcagggatcgaactcaagtactcctcattaatccgaccgtaacttaaactcatcaaccacttggttatgctctactca |
11612992 |
T |
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| Q |
307 |
attatacatatgaatgtttgacatctacatctaaatgtgaagagcaagcaaaggaaaaagaaaaggacc |
375 |
Q |
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| T |
11612991 |
attatacatatgaatgtttgacatctacatctaaatgtgaagagcaagcaaaggaaaaagaaaaggacc |
11612923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 39085132 - 39085196
Alignment:
| Q |
166 |
ggggttctggtaatccaaagttcggccagaaggtaagcaaagtctagccaaagattgtttaagtc |
230 |
Q |
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| T |
39085132 |
gggggtctggtaatccaaagttcggttaggaggtaagtgaagtcttgccaatgattgttcaagtc |
39085196 |
T |
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