View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10101_low_13 (Length: 372)
Name: NF10101_low_13
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 34127047 - 34127410
Alignment:
| Q |
1 |
tcttccttgatcagcttcatcaacaaactcagaagaataaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattcat |
100 |
Q |
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|||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34127047 |
tcttccttcatcaccttcatcaacaaattcagaagaataaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattcat |
34127146 |
T |
|
| Q |
101 |
acccataacctcaaattctctatattttctacaacatccttaatcttaacatcaatctcaccatcaccaccattgggggtgtgcaaataattttgttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34127147 |
acccataacctcaaattctctatattttctacaacatccttaatcttaacatcaatctcaccatcaccaccattgggggtgtgcaaataattttgttaaa |
34127246 |
T |
|
| Q |
201 |
tcgtcaacctatttatagtttagattcgtaaatttcttctcacatattgaaaattgcactttaattcttctttcaaagtttagattcaatttatgcnnnn |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34127247 |
tcgtcaacctatttatagtttaga-tcgtaaatttcttctcccatattgaaaattgcactttaattcttctttcaaagtttagattcaatttatgc-aaa |
34127344 |
T |
|
| Q |
301 |
nnnnnnnnnnnnnnnnnttggatctattgagaacatttcttcactctatttcagttcatgttcatc |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34127345 |
aaaaaaataaaaaaaaattggatctattgagaacatttcttcactctatttcagttcatgttcatc |
34127410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 14160239 - 14160162
Alignment:
| Q |
39 |
aaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattcatacccataacctcaaatt |
117 |
Q |
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| T |
14160239 |
aaaactcaagaaacccaataatctaatttaaacatcaatattcaa-ttttccccaaattcaaacccctgacctcaaatt |
14160162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 17689974 - 17690056
Alignment:
| Q |
44 |
tcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattcatacccataacctcaaattctctatattt |
127 |
Q |
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|||| ||||||||||||| |||||||| |||| |||||||||||| |||||||||| |||| |||||||||||| || |||||| |
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| T |
17689974 |
tcaagaaacccaataatctaatttaaaaatcaatattcaattttt-cccaaattcaaacccctaacctcaaattttccatattt |
17690056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 9449941 - 9450045
Alignment:
| Q |
16 |
ttcatcaacaaactcagaagaataaaaa----tcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattcatacccataacct |
111 |
Q |
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||||||||||||| ||||| ||| |||| |||| ||||||||| ||| ||||||||||||| |||||| ||||||||||||||| |||| | |||| |
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| T |
9449941 |
ttcatcaacaaacccagaaaaattaaaaaaactcaagaaacccaatgatctaatttaaacatcaacattcaa-ttttccccaaattcaaacccctcacct |
9450039 |
T |
|
| Q |
112 |
caaatt |
117 |
Q |
| |
|
|||||| |
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|
| T |
9450040 |
caaatt |
9450045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 21325526 - 21325467
Alignment:
| Q |
39 |
aaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattc |
98 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
21325526 |
aaaactcaacaaaaccaataatccaatttaaacatcaattttcaattttctcccaaattc |
21325467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 8594303 - 8594362
Alignment:
| Q |
39 |
aaaaatcaacaaacccaataatccaatttaaacatcattattcaatttttccccaaattc |
98 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||| |||||| |||| ||||||||| |
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| T |
8594303 |
aaaactcaacaaatccaataatccaatttaaacatcaatattcatttttctcccaaattc |
8594362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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