View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10101_low_14 (Length: 340)
Name: NF10101_low_14
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 48453283 - 48452958
Alignment:
| Q |
1 |
atcgttgcatttaaacatgctaatattctaatacatattgagtttattacacttgtatctccattatctttccaaatatagccttttgatttgattcctt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48453283 |
atcgttgcatttaaacatcctaatattctaatacatattgagtttattacacttgtatctccattatctttccaaatatagccttttgatttgattcctt |
48453184 |
T |
|
| Q |
101 |
tatggagtcgcaagttttcattggaagtattttatgtgtatagttatacaagtttttgttattagtttagaaaaaatgcttaggnnnnnnnagtttcatt |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48453183 |
tatggagttgcaagttttcattggaagtattttatgtgtatagttatacaagtttttgttattagtttagaaaaaatgcttaggtttttttagtttcatt |
48453084 |
T |
|
| Q |
201 |
catcgatataagtttatttgatttaactgacataacnnnnnnncagctcacacgcccaaaggtcattaaaaatcagaaagttatcaaggatatgttgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48453083 |
catcgatataagtttatttgatttaactgacataactttttttcagctcacacgcccaaaggtcgttaaaaatcagaaagttatcaaggatatgttgata |
48452984 |
T |
|
| Q |
301 |
tatgctcacatgacaaggtcggagtt |
326 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
48452983 |
tatgctcacatgaaaaggtcggagtt |
48452958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University