View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10101_low_15 (Length: 308)

Name: NF10101_low_15
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10101_low_15
NF10101_low_15
[»] chr3 (4 HSPs)
chr3 (1-285)||(29199434-29199718)
chr3 (219-285)||(19768134-19768200)
chr3 (237-285)||(12572413-12572461)
chr3 (237-285)||(13548877-13548925)
[»] chr5 (1 HSPs)
chr5 (20-285)||(4351403-4351687)
[»] scaffold0352 (1 HSPs)
scaffold0352 (20-231)||(15387-15616)
[»] chr6 (1 HSPs)
chr6 (219-285)||(22082827-22082893)
[»] chr1 (1 HSPs)
chr1 (141-284)||(51389747-51389888)
[»] chr4 (2 HSPs)
chr4 (219-285)||(37617082-37617148)
chr4 (1-57)||(25900977-25901033)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 29199434 - 29199718
Alignment:
Q  1 ttttatttgtttctgtttgtgtgaccaactatagttgtaaaaccatctcttggtttttctttttaagcattttattgctactgtgaaaaattcttgatca 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199434 ttttatttgtttctgtgtgtgtgaccaactatagttgtaaaaccatctcttggtttttctttttaagcattttattgctactgtgaaaaattcttgatca 29199533  T
Q  101 caccaactatgagatattgatatcacttttatgttctctttcttaaatcatttcagtgtattggaagtttacaaagcattcaaatttggatgtgctttgt 200  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199534 caccaactatgagttattgatatcacttttatgtcctctttcttaaatcatttcagtgtattggaagtttacaaagcattcaaatttggatgtgctttgt 29199633  T
Q  201 tagatctttaatcgtttgtgagggagctttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29199634 tagatctttaatcgtttgtgagggagctttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag 29199718  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 19768134 - 19768200
Alignment:
Q  219 tgagggagctttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag 285  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  19768134 tgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaag 19768200  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 12572461 - 12572413
Alignment:
Q  237 gtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag 285  Q
    ||||| ||| |||||||||| || ||||| |||||||||||||||||||    
T  12572461 gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaag 12572413  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 13548925 - 13548877
Alignment:
Q  237 gtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag 285  Q
    ||||| ||| |||||||||| || ||||| |||||||||||||||||||    
T  13548925 gtggcagtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaag 13548877  T

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Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 4351403 - 4351687
Alignment:
Q  20 tgtgaccaactatagttgtaaaaccatctcttggtttttctttttaagcattttattgctactgtgaaaaattcttgatcacaccaa------------- 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  || || ||||||||||                 
T  4351403 tgtgaccaaatatagttgtaaaaccatctcttggtttttctttttaagcattttattgctactgtggaattttttttatcacaccaagtgtagttgtaaa 4351502  T
Q  107 -----ctat-gagatattgatatcacttttatgttctctttcttaaatcatttcagtgtattggaagtttacaaagcattcaaatttggatgtgctttgt 200  Q
         |||| ||| ||||||||||| |||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||||| || ||||| || ||||    
T  4351503 atcagctattgagttattgatatcatttttatgtcctctttcttgaatcatttcagtgcattggaagtttac-aagcattcaatttcggatgggcattgt 4351601  T
Q  201 tagatctttaatcgtttgtgagggagc-tttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag 285  Q
    |||||||| |||||||||||||||||| ||||| |||||||| ||| |||||||||| || ||||| | |||||||||||||||||    
T  4351602 tagatcttgaatcgtttgtgagggagctttttttttcgtggcagtcagtgtgtgttacgcggcattgtttgttttgtttatgtaag 4351687  T

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Target: scaffold0352 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 15616 - 15387
Alignment:
Q  20 tgtgaccaactatagttgtaaaaccatctcttggtttttctttttaagcattttattgctactgtgaaaaattcttgatcacaccaa------------- 106  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||   | || ||||||||||                 
T  15616 tgtgaccaaatatagatgtaaaaccatctcttggttttcctttttaagcattttattgctactgtggaattattttaatcacaccaagtgtagttgtaaa 15517  T
Q  107 -----ctat-gagatattgatatcacttttatgttctctttcttaaatcatttcagtgtattggaagtttacaaagcattcaaatttggatgtgctttgt 200  Q
         |||| ||| |||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||| ||||||| || || ||||| || ||||    
T  15516 atcatctattgagttattgatatcacttttatgtcctctttcttgaatcatttctgtgcattggaagtttac-aagcatttaatttcggatgggcattgt 15418  T
Q  201 tagatctttaatcgtttgtgagggagctttt 231  Q
    |||||||| ||||||||||||||||||||||    
T  15417 tagatcttgaatcgtttgtgagggagctttt 15387  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 22082827 - 22082893
Alignment:
Q  219 tgagggagctttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag 285  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  22082827 tgagggagctttttcttcgtggctgtcagtgtgtgttatactgcattatgtgttttgtttatgtaag 22082893  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 284
Target Start/End: Complemental strand, 51389888 - 51389747
Alignment:
Q  141 tcttaaatcatttcagtgtattggaagtttacaaagcattcaaatttggatgtgctttgttagatctttaatcgtttgtgagggagctttttcttcgtgg 240  Q
    |||| ||||||||||||| ||||||| ||||| | |||||| |||| ||||| ||||||| |||  || |||||||||||||||| || |||||| ||||    
T  51389888 tcttgaatcatttcagtgcattggaaatttacta-gcattcgaattcggatgggctttgtaagactttgaatcgtttgtgaggga-ctatttctttgtgg 51389791  T
Q  241 ctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaa 284  Q
    || ||||||| ||||||||||| || |||| |||||||||||||    
T  51389790 ctatcggtgtatgttatgctgcgttgtgtggtttgtttatgtaa 51389747  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 37617148 - 37617082
Alignment:
Q  219 tgagggagctttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaag 285  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||    
T  37617148 tgagggagctttttcttcgtggctgtcagcgtgtgttatactgcattatgtgttttgtttatgtaag 37617082  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25901033 - 25900977
Alignment:
Q  1 ttttatttgtttctgtttgtgtgaccaactatagttgtaaaaccatctcttggtttt 57  Q
    |||||||||| ||||| | |||||||||||||||||||||||  |||||||||||||    
T  25901033 ttttatttgtgtctgtgtatgtgaccaactatagttgtaaaattatctcttggtttt 25900977  T

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