View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10101_low_17 (Length: 297)
Name: NF10101_low_17
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 46188340 - 46188068
Alignment:
| Q |
11 |
caaaggccactacagtttaagataagtatgtctatatcaaaaggtgaaagctttgtttttgcaaaaagatcatcaatgatatggaaaagtagcatgtgaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
46188340 |
caaaagccactacagtttaagataagtatgtctatatcaaaaggtgaaagctttgtttttgcaaaaagatcatcaatgatagggaaaagaagcatgtgaa |
46188241 |
T |
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| Q |
111 |
gttctttgatggattcagaatgatgggtttttggtggaatgtagtgcaaggaaggagggagacaagtttcttcactttgacctgaagagtgaagtacttt |
210 |
Q |
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| T |
46188240 |
gttctttgatggattcagaatgatgggtttttggtggaatgtagtgcaaggaaggagggagacaagtttcttcactttgacctgaagagtgaagtacttt |
46188141 |
T |
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| Q |
211 |
ttccatgaaagacatgctttcattgtcaaaacattcaaacaatgaagcattttcaaggaatgttgagaaaggt |
283 |
Q |
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| T |
46188140 |
ttccatgaaagccatgctttcattgtcaaaacattcaaacaatgaagcattttcaaggaatgttgagaaaggt |
46188068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 17931818 - 17931585
Alignment:
| Q |
11 |
caaaggccactacagtttaagataagtatgtctatatcaaaaggtgaaagctttgtttttgcaaaaagatcatcaatgatatggaaaagtagcatgtgaa |
110 |
Q |
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|||| |||||| || ||||||||||||||||||||||||| |||| ||| || |||||| ||||||||||||| |||||| ||||||| | ||||||| |
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| T |
17931818 |
caaaagccactgcaatttaagataagtatgtctatatcaataggtaaaatattggtttttacaaaaagatcatccatgatagggaaaagaaccatgtgag |
17931719 |
T |
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| Q |
111 |
gttctttgatggattcagaatgatgggtttttggtggaatgtagtgcaaggaaggagggagacaagtttcttcactttgacctgaagagtgaagtacttt |
210 |
Q |
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| T |
17931718 |
cctctttgatggattcaatattttgagtttttggtggaatgtagagtaaggaaggagggacacaagtctcttcactttggcctgaagaataaaggacttt |
17931619 |
T |
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| Q |
211 |
ttccatgaaagacatgctttcattgtcaaaacat |
244 |
Q |
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| T |
17931618 |
ttgcatgtaatctatgctttcactgtcaaaacat |
17931585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 32832825 - 32833058
Alignment:
| Q |
11 |
caaaggccactacagtttaagataagtatgtctatatcaaaaggtgaaagctttgtttttgcaaaaagatcatcaatgatatggaaaagtagcatgtgaa |
110 |
Q |
| |
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|||| |||||| || ||||||||||| ||||||||||| | |||| ||| || |||||||| ||||||||||| |||||| ||||||| | ||||||| |
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| T |
32832825 |
caaaagccactgcaatttaagataagcatgtctatatcgataggtaaaatattggtttttgcgaaaagatcatccatgatagggaaaagaaccatgtgag |
32832924 |
T |
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| Q |
111 |
gttctttgatggattcagaatgatgggtttttggtggaatgtagtgcaaggaaggagggagacaagtttcttcactttgacctgaagagtgaagtacttt |
210 |
Q |
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| T |
32832925 |
cctctttgatggattcaatagttttggtttttggtggaatgtagtgcaaggaaggagggagacaagtatcttcactttggcctgaagaataaaggacttt |
32833024 |
T |
|
| Q |
211 |
ttccatgaaagacatgctttcattgtcaaaacat |
244 |
Q |
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| T |
32833025 |
tttcatgtaatctatgctttcactgtcaaaacat |
32833058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 32846106 - 32846339
Alignment:
| Q |
11 |
caaaggccactacagtttaagataagtatgtctatatcaaaaggtgaaagctttgtttttgcaaaaagatcatcaatgatatggaaaagtagcatgtgaa |
110 |
Q |
| |
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|||| |||||| || ||||||||||| ||||||||||| | |||| ||| || |||||||| ||||||||||| |||||| ||||||| | ||||||| |
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| T |
32846106 |
caaaagccactgcaatttaagataagcatgtctatatcgataggtaaaatattggtttttgcgaaaagatcatccatgatagggaaaagaaccatgtgag |
32846205 |
T |
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| Q |
111 |
gttctttgatggattcagaatgatgggtttttggtggaatgtagtgcaaggaaggagggagacaagtttcttcactttgacctgaagagtgaagtacttt |
210 |
Q |
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||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||| ||||| |
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| T |
32846206 |
cctctttgatggattcaatagttttggtttttggtggaatgtagtgcaaggaaggagggagacaagtatcttcactttggcctgaagaataaaggacttt |
32846305 |
T |
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| Q |
211 |
ttccatgaaagacatgctttcattgtcaaaacat |
244 |
Q |
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|| |||| || ||||||||| ||||||||||| |
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| T |
32846306 |
tttcatgtaatctatgctttcactgtcaaaacat |
32846339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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