View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10101_low_18 (Length: 291)
Name: NF10101_low_18
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 24142157 - 24142417
Alignment:
| Q |
18 |
gcaacgatgtagcatagagttttccctcagcttcatgaacttcactgactgatccagtaccgaacccctcaacaagaggcacagcctctaaaattaaacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142157 |
gcaacgatgtagcatagagttttccctcagcttcatgaacttcactgactgatccagtaccaaacccctcaacaagaggcacagcctctaaaattaaacc |
24142256 |
T |
|
| Q |
118 |
ttgctcgttgattcttagtccaagaggcaaaacaggaggtactggtggtggtggtgatccaaaaggataattcactgccacccaaaactcgttcttcgag |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142257 |
ttgctcattgattcttagtccaagaggcaaaacaggaggtactggtggtggtggtgatccaaaaggataattcactgccacccaaaactcgttcttcgag |
24142356 |
T |
|
| Q |
218 |
gtccttttgatgttatctggtct-cccggaagccacaagaatatatctgaagtatatgcat |
277 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24142357 |
gtccttttgatgttatctggtctccccggaagccacaagaatatatctgaagtatatgcat |
24142417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 24153730 - 24153989
Alignment:
| Q |
19 |
caacgatgtagcatagagttttccctcagcttcatgaacttcactgactgatccagtaccgaacccctcaacaagaggcacagcctctaaaattaaacct |
118 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||| ||||||||||| || ||| |||||| ||| |||||||||||||||||| ||||| ||| |||||| |
|
|
| T |
24153730 |
caacgatgtagcatagagtcttccctcggattcttgaacttcactcaccgattcagtactaaacgcctcaacaagaggcacagactctataatcaaacct |
24153829 |
T |
|
| Q |
119 |
tgctcgttgattcttagtccaagaggcaaaacaggaggtactggtggtggtggtgatccaaaaggataattcactgccacccaaaactcgttcttcgagg |
218 |
Q |
| |
|
| | |||||| ||||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24153830 |
tccgcgttgactcttagtcctagaggcaatacaggaggtactggtggtggtgaggatgcaaaaggataattcactgccacccaaaactcgttcctcgagt |
24153929 |
T |
|
| Q |
219 |
tccttttgatgttatctggtc-tcccggaagccacaagaatatatctgaagtatatgcat |
277 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
24153930 |
tccttctgatgttatctggtcttcctggaaggcgcaagaatatatctgaagtatatgcat |
24153989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University