View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10101_low_19 (Length: 280)

Name: NF10101_low_19
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10101_low_19
NF10101_low_19
[»] chr3 (19 HSPs)
chr3 (10-265)||(36004565-36004820)
chr3 (24-267)||(36025340-36025583)
chr3 (10-260)||(36017228-36017478)
chr3 (10-260)||(36034134-36034388)
chr3 (40-257)||(23465292-23465509)
chr3 (40-257)||(23353789-23354006)
chr3 (40-257)||(23406638-23406855)
chr3 (40-261)||(23449159-23449380)
chr3 (40-257)||(23500922-23501139)
chr3 (40-257)||(23480649-23480866)
chr3 (52-266)||(36009655-36009869)
chr3 (40-257)||(23441769-23441986)
chr3 (40-257)||(23474301-23474518)
chr3 (10-247)||(23455893-23456130)
chr3 (106-257)||(23435423-23435574)
chr3 (48-242)||(21088472-21088666)
chr3 (76-257)||(21087312-21087493)
chr3 (13-257)||(23388251-23388495)
chr3 (37-110)||(35766334-35766407)
[»] chr4 (1 HSPs)
chr4 (35-267)||(12894610-12894842)
[»] chr2 (3 HSPs)
chr2 (10-260)||(16124742-16124992)
chr2 (10-260)||(16334659-16334909)
chr2 (43-260)||(16126928-16127145)
[»] scaffold0201 (1 HSPs)
scaffold0201 (10-247)||(13436-13673)
[»] scaffold0570 (2 HSPs)
scaffold0570 (11-247)||(9667-9903)
scaffold0570 (42-170)||(3309-3437)
[»] scaffold0022 (1 HSPs)
scaffold0022 (127-243)||(167561-167677)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 265
Target Start/End: Original strand, 36004565 - 36004820
Alignment:
Q  10 gcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36004565 gcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacatt 36004664  T
Q  110 ctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36004665 ctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcag 36004764  T
Q  210 tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataa 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36004765 tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataa 36004820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 267
Target Start/End: Original strand, 36025340 - 36025583
Alignment:
Q  24 ataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacg 123  Q
    ||||||||| || ||||||||||||||||||||||||||||| |||||||  ||||||||||||||||| | ||||||||| ||||||||||||||||||    
T  36025340 ataacttcctttctgattcctcacatgtgatggatctatttcatagaaaacaggtatcacaatctgtccattatctttcttgcattctagaatcttgacg 36025439  T
Q  124 agttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatct 223  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  36025440 agttcattcaagcaccattttgaggaagcatagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatct 36025539  T
Q  224 cgtctcctttttcaagctcattgtcatctataaatgttataact 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  36025540 cgtctcctttttcaagctcattgtcatctataaatgttataact 36025583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 36017228 - 36017478
Alignment:
Q  10 gcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacatt 109  Q
    ||||||||||||   ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  36017228 gcaaaggcttgcttgtaactcccaatttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatttgtccctgatctttcttgcatt 36017327  T
Q  110 ctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcag 209  Q
    |||||||||||||||||||||||||||| ||||| || ||||| |||||||| ||||| ||||| |||||||||   || || ||||| |||||||||||    
T  36017328 ctagaatcttgacgagttcattcaagcatcatttagaagaagcatagtctttcgagaatatgactatagatgcatctgactcctcaatggctttgatcag 36017427  T
Q  210 tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgt 260  Q
    |||||| ||||||||||||||||||||||||||  ||||||||| ||||||    
T  36017428 tgctgatgagatctcgtctcctttttcaagctcgctgtcatctacaaatgt 36017478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 36034134 - 36034388
Alignment:
Q  10 gcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacatt 109  Q
    ||||||||||||   ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||    
T  36034134 gcaaaggcttgcttgtaactcccaatttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgcccatgatctttcttgcatt 36034233  T
Q  110 ctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgat----agatgcagacgaatcttcaatagctttga 205  Q
    |||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||| ||||  ||    |||||||   || || ||||| |||||||    
T  36034234 ctagaatcttgacgagttcattcaaataccattttgaagaagcatagtcttttgagaatatgaatatatagagatgcatctgactcctcaatggctttga 36034333  T
Q  206 tcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgt 260  Q
    |||||||||| ||||||||||||||||||||||||||  |||| |||||||||||    
T  36034334 tcagtgctgatgagatctcgtctcctttttcaagctcgctgtcgtctataaatgt 36034388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 23465292 - 23465509
Alignment:
Q  40 ttcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcacc 139  Q
    ||||||||||||||||||||||| | ||| ||||  ||||||||||||||| ||  || |||||| ||||| ||||||||   ||| |||||||||||||    
T  23465292 ttcctcacatgtgatggatctatgttgtaaaaaactggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcacc 23465391  T
Q  140 attttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaag 239  Q
    ||||||||||||| |||| || |||||||||||| |||||||||   || || ||||| |||||||| ||||||| ||||||||| |||||||||| |||    
T  23465392 attttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaag 23465491  T
Q  240 ctcattgtcatctataaa 257  Q
    ||||||||  ||||||||    
T  23465492 ctcattgttgtctataaa 23465509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 23353789 - 23354006
Alignment:
Q  40 ttcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcacc 139  Q
    ||||||||||||||||||||||| | ||| ||||  |||||||||||||||  |  || |||||| ||||| ||||||||   ||| |||||||||||||    
T  23353789 ttcctcacatgtgatggatctatgttgtaaaaaactggtatcacaatctgttacatatatttcttgcattcaagaatctttttgagctcattcaagcacc 23353888  T
Q  140 attttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaag 239  Q
    ||||||||||||| |||| || |||||||||||| |||||||||   || || ||||| |||||||| ||||||| ||||||||| |||||||||| |||    
T  23353889 attttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaag 23353988  T
Q  240 ctcattgtcatctataaa 257  Q
    ||||||||  ||||||||    
T  23353989 ctcattgttgtctataaa 23354006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 23406638 - 23406855
Alignment:
Q  40 ttcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcacc 139  Q
    |||||||||| |||||||||||| | ||| ||||  ||||||||||||||| ||  || |||||| ||||| ||||||||   ||| |||||||||||||    
T  23406638 ttcctcacatttgatggatctatgttgtaaaaaacaggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcacc 23406737  T
Q  140 attttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaag 239  Q
    ||||||||||||| |||| || |||||||||||| |||||||||   || || ||||| |||||||| ||||||| ||||||||| |||||||||| |||    
T  23406738 attttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaag 23406837  T
Q  240 ctcattgtcatctataaa 257  Q
    ||||||||  ||||||||    
T  23406838 ctcattgttgtctataaa 23406855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 261
Target Start/End: Original strand, 23449159 - 23449380
Alignment:
Q  40 ttcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcacc 139  Q
    ||||||||||||||||||||||| | ||| ||||  |||||||||||||||  |  || |||||| ||||| ||||||||   ||| |||||||||||||    
T  23449159 ttcctcacatgtgatggatctatgttgtaaaaaactggtatcacaatctgttgcatatatttcttgcattcaagaatctttttgagctcattcaagcacc 23449258  T
Q  140 attttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaag 239  Q
    ||||||||||||| |||| || |||||||||||| |||||||||   || || ||||| |||||||| ||||||| ||||||||| |||||||||  |||    
T  23449259 attttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctccttttcgaag 23449358  T
Q  240 ctcattgtcatctataaatgtt 261  Q
    ||||||||  ||||||||||||    
T  23449359 ctcattgttgtctataaatgtt 23449380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 23500922 - 23501139
Alignment:
Q  40 ttcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcacc 139  Q
    ||||||||||||||||||||||| | ||| ||||  ||||||||||||||  ||  || |||||||||||| ||||||||   ||| |||||||||||||    
T  23500922 ttcctcacatgtgatggatctatgttgtaaaaaactggtatcacaatctgctccatatatttcttacattcaagaatctttttgagctcattcaagcacc 23501021  T
Q  140 attttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaag 239  Q
    ||||||| ||||| |||| || |||||||||||| |||||||||   || || ||||| |||||||| ||||||| ||||||||| |||||||||| |||    
T  23501022 attttgacgaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaag 23501121  T
Q  240 ctcattgtcatctataaa 257  Q
    ||||||||  ||||||||    
T  23501122 ctcattgttgtctataaa 23501139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 23480649 - 23480866
Alignment:
Q  40 ttcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcacc 139  Q
    ||||||||||||||||||||||||| ||| ||||  ||||||||||| ||| ||| || |||||| ||||| ||||||||   ||| |||||||||||||    
T  23480649 ttcctcacatgtgatggatctattttgtaaaaaactggtatcacaatgtgttccttatatttcttgcattcaagaatcttcttgagctcattcaagcacc 23480748  T
Q  140 attttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaag 239  Q
    ||||||| ||||| |||| || |||||||||||| |||||||||   || |  ||||| |||||||| ||||||| ||||||||| |||||||||| |||    
T  23480749 attttgaagaagcatagttttctgagaagatgacaatagatgcatgtgacttctcaatggctttgatgagtgctggcgagatctcatctcctttttgaag 23480848  T
Q  240 ctcattgtcatctataaa 257  Q
    || |||||  ||||||||    
T  23480849 cttattgttgtctataaa 23480866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 52 - 266
Target Start/End: Original strand, 36009655 - 36009869
Alignment:
Q  52 gatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcaccattttgaggaag 151  Q
    ||||||| |||| || ||||||  ||||||||||| ||||||  |||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  36009655 gatggatttattccgaagaaaacaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaag 36009754  T
Q  152 cgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatc 251  Q
    | || |||||||| |||||||| |||||||   | || || ||||| |||||||| |||| ||| || ||||| |||||||||||||| |||  ||| ||    
T  36009755 cataatcttttgaaaagatgactatagatgtgtatgactcctcaatggctttgattagtgatgatgatatctcatctcctttttcaagatcaccgtcgtc 36009854  T
Q  252 tataaatgttataac 266  Q
     |||||| |||||||    
T  36009855 cataaatattataac 36009869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 23441769 - 23441986
Alignment:
Q  40 ttcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcacc 139  Q
    ||||||||||||||||||||||| | ||| ||||  ||||||||||||||| ||  || |||||| ||||| ||||||||   ||| |||||||||||||    
T  23441769 ttcctcacatgtgatggatctatgttgtaaaaaacaggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcattcaagcacc 23441868  T
Q  140 attttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaag 239  Q
    ||||||||||||| |||| || |||||||||||| |||||  ||   || || ||||| ||| |||| ||||||| ||| ||||  |||||||||| |||    
T  23441869 attttgaggaagcatagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcctttttgaag 23441968  T
Q  240 ctcattgtcatctataaa 257  Q
    ||||||||  ||||||||    
T  23441969 ctcattgttgtctataaa 23441986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 23474301 - 23474518
Alignment:
Q  40 ttcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcacc 139  Q
    ||||||||||||||||||||||| | ||| ||||  ||||||||||||||| ||  || |||||| ||||| ||||||||   ||| |||||||||||||    
T  23474301 ttcctcacatgtgatggatctatgttgtaaaaaacaggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcattcaagcacc 23474400  T
Q  140 attttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaag 239  Q
    ||||||||||||| |||| || |||||||||||| |||||  ||   || || ||||| ||| |||| ||||||| ||| ||||  |||||||||| |||    
T  23474401 attttgaggaagcatagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcctttttgaag 23474500  T
Q  240 ctcattgtcatctataaa 257  Q
    ||||||||  ||||||||    
T  23474501 ctcattgttgtctataaa 23474518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 23455893 - 23456130
Alignment:
Q  10 gcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacatt 109  Q
    ||||||||||||   ||||| ||  |||| |||||||||||||||||||| || | ||| ||||| |||||||| |||||| ||  || || ||| ||||    
T  23455893 gcaaaggcttgcttgtaactcccggtttgcttcctcacatgtgatggatcaatgttgtaaaaaataggtatcacgatctgttccatatattgcttgcatt 23455992  T
Q  110 ctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcag 209  Q
    ||||||||||   ||| |||||||| |||||||||||||||||||||| || |||||||||||| |||||  ||   || || ||||| | |||||| ||    
T  23455993 ctagaatctttttgagatcattcaaacaccattttgaggaagcgtagttttctgagaagatgacaatagacacatgtgactcctcaatggttttgatgag 23456092  T
Q  210 tgctgacgagatctcgtctcctttttcaagctcattgt 247  Q
    || ||  |||||||| |||||||||| ||| |||||||    
T  23456093 tgttggtgagatctcatctcctttttgaaggtcattgt 23456130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 23435423 - 23435574
Alignment:
Q  106 cattctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttga 205  Q
    ||||||||||||||   ||| ||||| |||||||||||||| ||||| |||| || |||||||||||| |||||||||   || || ||||| |||||||    
T  23435423 cattctagaatctttttgagctcatttaagcaccattttgaagaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttga 23435522  T
Q  206 tcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaa 257  Q
    | ||||||| ||||||||| |||||||||| |||||||||||  ||||||||    
T  23435523 tgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaa 23435574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 21088472 - 21088666
Alignment:
Q  48 atgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcaccattttgag 147  Q
    |||| |||||||||||| ||| ||||  ||||||||||||||| ||  |  |||||| |||||| |||||||   ||| |||||||||||||||||||||    
T  21088472 atgtaatggatctattttgtaaaaaacaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaagcaccattttgag 21088571  T
Q  148 gaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctc 242  Q
    ||||| |||| || ||| ||||| || |||||| ||   || || |||||||||| ||| | ||||| |||||||||||||||||||| ||||||    
T  21088572 gaagcatagttttctgaaaagataacaatagatacacgtgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctc 21088666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 76 - 257
Target Start/End: Original strand, 21087312 - 21087493
Alignment:
Q  76 ggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacga 175  Q
    ||||||||||| ||| ||| || |||||| ||||||||||||||   ||| ||||||||||||||||||||||||||||||| || |||||||||| | |    
T  21087312 ggtatcacaatttgttccttatatttcttgcattctagaatctttttgagctcattcaagcaccattttgaggaagcgtagttttctgagaagatgtcaa 21087411  T
Q  176 tagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaa 257  Q
    | ||||||   || |||||||| |||||||| ||| |||  | |||||  |||||||||| ||||| |||||  ||||||||    
T  21087412 tcgatgcatgtgactcttcaatggctttgatgagttctggtgtgatcttatctccttttttaagcttattgttgtctataaa 21087493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 23388251 - 23388495
Alignment:
Q  13 aaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattcta 112  Q
    ||||||||| | ||||| ||| | || |||||||||||||| |||||||| | ||| ||||  |||||||||||||||  |  || |||||| ||||  |    
T  23388251 aaggcttgctcgtaactcccagtctgcttcctcacatgtgagggatctatgttgtaaaaaacaggtatcacaatctgttgcatatatttcttgcattgaa 23388350  T
Q  113 gaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgc 212  Q
    |||||||   ||| |||||||||||||||||||||||||| || | || |||||||||||  || ||  |    || || ||||| |||||||| |||||    
T  23388351 gaatcttcttgagctcattcaagcaccattttgaggaagcataattttctgagaagatgataattgacacgtgtgactcctcaatggctttgatgagtgc 23388450  T
Q  213 tgacgagatctcgtctcctttttcaagctcattgtcatctataaa 257  Q
    ||  |||||||| ||||||||||||||||||||||  ||||||||    
T  23388451 tggtgagatctcatctcctttttcaagctcattgttgtctataaa 23388495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 35766407 - 35766334
Alignment:
Q  37 tgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattc 110  Q
    ||||| ||||||||||||||||||||||  ||||| |  ||||||||||| |||||| ||||||||||||||||    
T  35766407 tgatttctcacatgtgatggatctattttatagaacacaggtatcacaatttgtccccgatctttcttacattc 35766334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 35 - 267
Target Start/End: Complemental strand, 12894842 - 12894610
Alignment:
Q  35 tttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaa 134  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  12894842 tttgattcctcacatgtgatggatctatttcgtaaaaaacaggtatcacaatttgtccatgatctttcttgcattctagaatcttgacgagttcattcaa 12894743  T
Q  135 gcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttt 234  Q
     ||||||||||||||||| |||||| ||||||||||||| ||||||||| | || || ||||| |||||||||| |||||| || ||||| |||||||||    
T  12894742 acaccattttgaggaagcatagtctattgagaagatgacaatagatgcatatgactcctcaatggctttgatcaatgctgaggatatctcatctcctttt 12894643  T
Q  235 tcaagctcattgtcatctataaatgttataact 267  Q
    | ||||||||||||||||||||| |||||||||    
T  12894642 tgaagctcattgtcatctataaaggttataact 12894610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 16124742 - 16124992
Alignment:
Q  10 gcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacatt 109  Q
    |||||||||||||| ||||| ||| | ||||| |||||||| |||||||||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||    
T  16124742 gcaaaggcttgcccgtaactcccaatctgatttctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcatt 16124841  T
Q  110 ctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcag 209  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||| |||||||| ||||||||| | || |||||||| |||||||||||    
T  16124842 ctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcag 16124941  T
Q  210 tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgt 260  Q
    |||||| |||||||| |||||||||| ||||||  |||| |||||||||||    
T  16124942 tgctgatgagatctcatctccttttttaagctcgctgtcgtctataaatgt 16124992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 16334909 - 16334659
Alignment:
Q  10 gcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacatt 109  Q
    |||||||||||||| || || ||| | ||||  |||||||| |||||||||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||    
T  16334909 gcaaaggcttgcccgtagctcccaatctgatatctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcatt 16334810  T
Q  110 ctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcag 209  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||| || ||| |||||||| ||||||||| | || |||||||| |||||||||||    
T  16334809 ctagaatcttgacgagttcattcaaacaccattttgaagaagcatagttttctgataagatgactatagatgcacatgactcttcaatggctttgatcag 16334710  T
Q  210 tgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgt 260  Q
    |||||| |||||||| |||||||||| |||||| |||||||||||||||||    
T  16334709 tgctgatgagatctcatctccttttttaagctcgttgtcatctataaatgt 16334659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 43 - 260
Target Start/End: Original strand, 16126928 - 16127145
Alignment:
Q  43 ctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcaccatt 142  Q
    |||||||| |||||||||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  16126928 ctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccatt 16127027  T
Q  143 ttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctc 242  Q
    |||| ||||| ||||||| ||| |||||||| ||||||||| | || |||||||| ||||||||||||||||| |||||||| |||||||||| ||||||    
T  16127028 ttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctc 16127127  T
Q  243 attgtcatctataaatgt 260  Q
      |||| |||||||||||    
T  16127128 gctgtcgtctataaatgt 16127145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 13436 - 13673
Alignment:
Q  10 gcaaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacatt 109  Q
    ||||||||||||   ||||||||| | || |||||||||| || ||||||||| | ||| ||||  ||||||||||||||| ||  || |||||| ||||    
T  13436 gcaaaggcttgctggtaacttccagtctgcttcctcacatttgctggatctatgttgtaaaaaacaggtatcacaatctgttccatatatttcttgcatt 13535  T
Q  110 ctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcag 209  Q
    | ||||||||   ||| ||||| |||||||||||||||||||| |||| || |||||||||||| |||||||||   || || ||||| |||||||| ||    
T  13536 caagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgag 13635  T
Q  210 tgctgacgagatctcgtctcctttttcaagctcattgt 247  Q
    ||||| ||||||||| |||||||||| |||||||||||    
T  13636 tgctgccgagatctcatctcctttttgaagctcattgt 13673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 9903 - 9667
Alignment:
Q  11 caaaggcttgcccataacttccattttgattcctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattc 110  Q
    ||||||||||| | ||||||||| | || || ||||||| || ||||||||  | ||| ||||  |||||||| |||||| ||  || || ||| |||||    
T  9903 caaaggcttgctcgtaacttccagtctgctttctcacatttgctggatctaagttgtaaaaaacaggtatcaccatctgttccatatattgcttgcattc 9804  T
Q  111 tagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagt 210  Q
     ||||||||   ||| ||||| |||||||||||||||||||| |||| || ||||||||| || |||||||||   || || ||||| |||||||| |||    
T  9803 aagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagattacaatagatgcatgtgactcctcaatggctttgatgagt 9704  T
Q  211 gctgacgagatctcgtctcctttttcaagctcattgt 247  Q
    |||| ||||||||| |||||||||| |||||||||||    
T  9703 gctgccgagatctcatctcctttttgaagctcattgt 9667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 3437 - 3309
Alignment:
Q  42 cctcacatgtgatggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcaccat 141  Q
    ||||||||| ||||||||||| ||||| ||||  |  || ||||||||| ||  || |||||  ||||||| ||||||   ||| ||||||||||| |||    
T  3437 cctcacatgcgatggatctatgtcgtaaaaaacagacattacaatctgttccatatatttctagcattctataatctttttgagctcattcaagcatcat 3338  T
Q  142 tttgaggaagcgtagtcttttgagaagat 170  Q
    ||||||||||| |||| || |||||||||    
T  3337 tttgaggaagcatagttttatgagaagat 3309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 167677 - 167561
Alignment:
Q  127 tcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgt 226  Q
    |||||||||||||||| ||||||||| |||| || |||||||||||| |||||||||    | || ||||| |||||||| |||| || ||||||||| |    
T  167677 tcattcaagcaccattatgaggaagcatagttttctgagaagatgacaatagatgcatgttactcctcaatggctttgatgagtgttggcgagatctcat 167578  T
Q  227 ctcctttttcaagctca 243  Q
    ||||||||| |||||||    
T  167577 ctcctttttgaagctca 167561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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