View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10101_low_2 (Length: 719)
Name: NF10101_low_2
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 682; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 18 - 707
Target Start/End: Original strand, 3056696 - 3057385
Alignment:
| Q |
18 |
tatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056696 |
tatttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttg |
3056795 |
T |
|
| Q |
118 |
cacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056796 |
cacttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttga |
3056895 |
T |
|
| Q |
218 |
agaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3056896 |
agaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttatgtgcattggttgagggtgacaat |
3056995 |
T |
|
| Q |
318 |
gaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056996 |
gaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtgg |
3057095 |
T |
|
| Q |
418 |
tacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3057096 |
tacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagatt |
3057195 |
T |
|
| Q |
518 |
ggcaacttgtgctaatacttgttgtgctcttttctaagattgacaacttgtgctgatacttgttgtgctcttttaagtgtaccgtaatatttgcatttat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3057196 |
ggcaacttgtgctaatacttgttgtgctcttttctaagattgacaacttgtgctgatacttgttgtgctcttttaagtgtaccgtaatatttgcatttat |
3057295 |
T |
|
| Q |
618 |
gtttgtgtatcaagatgttgtttccatattatggtaggttccaatattagttcatctccacgtacccctcaatcatatgttgttcatctc |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3057296 |
ttttgtgtatcaagatgttgtttccatattatggtaggttccaatattagttcatctccacgtacccctcaatcatatgttgttcatctc |
3057385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 21 - 538
Target Start/End: Original strand, 3035831 - 3036348
Alignment:
| Q |
21 |
ttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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|
| T |
3035831 |
ttcaatgcaagaatttctgattttggattagcaaagttgttgaacatgaatcaaagcaaaaccaacaccggcataagaggaataaaagggtatgttgcac |
3035930 |
T |
|
| Q |
121 |
ttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaaga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3035931 |
ttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaaga |
3036030 |
T |
|
| Q |
221 |
aatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
3036031 |
aatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaatgatggtgctttagatgcattggttgagggtgacaatgaa |
3036130 |
T |
|
| Q |
321 |
gcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtggtac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |
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|
| T |
3036131 |
gcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatgtcttagaccaaccatgagaaatgtggtac |
3036230 |
T |
|
| Q |
421 |
atatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagattggc |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||| |
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|
| T |
3036231 |
atatgcttgaaggtactgttgaagtgcaagttccaccatacccctcaccaattagtattcaatattctctaaattaataagttgggaagcaaagattggc |
3036330 |
T |
|
| Q |
521 |
aacttgtgctaatacttg |
538 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3036331 |
aacttgtgctaatacttg |
3036348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 21 - 502
Target Start/End: Complemental strand, 3070213 - 3069732
Alignment:
| Q |
21 |
ttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3070213 |
ttcaatgcaagaatttctgattttggattagcaaagctgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
3070114 |
T |
|
| Q |
121 |
ttgaatggtttaaaaacatgcctatcacagctaaggtggatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaaga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070113 |
ttgaatggtttaaaaacatgcctatcacagctaaggttgatgtgtatagttatggtgtagtgctacttgagataatttcatgtagaaaatgtgttgaaga |
3070014 |
T |
|
| Q |
221 |
aatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaa |
320 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3070013 |
aatggatgaagaagatgaagacaaagctatcttaactgattgggcttatgattgctacaaatatggtgctttaggtgcattggttgagggtgacaatgag |
3069914 |
T |
|
| Q |
321 |
gcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtggtac |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||| ||| ||||||| ||||| ||| |
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|
| T |
3069913 |
gcattggaggacaaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatgcatgtcttagatcaaccatgagaaatgtgatac |
3069814 |
T |
|
| Q |
421 |
atatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagt |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
3069813 |
atatgcttgaaggtactgttgaagtgcaagctccgttaaacccctcaccgtttagtattcaatattctctaaattaataagt |
3069732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 192 - 433
Target Start/End: Complemental strand, 3049081 - 3048840
Alignment:
| Q |
192 |
ataatttcatgtagaaaatgtgttgaagaaatggatgaagaagatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctt |
291 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||| || |||||||| ||||||||||| ||||||||||| ||| | |
|
|
| T |
3049081 |
ataatttcatgtagaagatgtgttgaagaaatggatcaagaaaatgaatacaaagctatcttaactgaatgggcttatgactgctacaaagaaggtattc |
3048982 |
T |
|
| Q |
292 |
taggtgcattggttgagggtgacaatgaagcattggaggacaaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccata |
391 |
Q |
| |
|
||| | | |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
3048981 |
tagatcccttggttgagggtgacaatgaggcattgaaggacaaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatccata |
3048882 |
T |
|
| Q |
392 |
tcttagaccaaacatgagagatgtggtacatatgcttgaagg |
433 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
3048881 |
tcttagaccaaccatgagaaatgtgatacatatgcttgaagg |
3048840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 424 - 533
Target Start/End: Complemental strand, 3048436 - 3048326
Alignment:
| Q |
424 |
tgcttgaaggtactgttgaagtgcaagttccaccat--acccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagattggca |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
3048436 |
tgcttgaaggtactgttgaagtgcaagttccaccatacacccttcaccaattagtattgaatattctctaaattaataactttgtaag-gaagattggca |
3048338 |
T |
|
| Q |
522 |
acttgtgctaat |
533 |
Q |
| |
|
||||||||||| |
|
|
| T |
3048337 |
gcttgtgctaat |
3048326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 553 - 664
Target Start/End: Original strand, 3036322 - 3036432
Alignment:
| Q |
553 |
aagattgacaacttgtgctgatacttgttgtgctctttt-aagtgtaccgt--aatatttgcatttatgtttgtgtatcaagatgttgtttccatattat |
649 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
3036322 |
aagattggcaacttgtgctaatacttgc---gctctttttaagtgtaccgtgtaatatttgcatttatgtttgtgt-tcaagatgtgatttccatattaa |
3036417 |
T |
|
| Q |
650 |
ggtaggttccaatat |
664 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
3036418 |
ggtaggtcccaatat |
3036432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 21457608 - 21457736
Alignment:
| Q |
21 |
ttcaatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||||||||||||| ||| |||||||||||| |||||| |||| |||| ||||| || ||| |
|
|
| T |
21457608 |
ttcaatgcaagaatttctgactttggattagcaaaattgttgaacatgaatttgagcgaaaccaacactgccataaggggaagaaaatggtatctttcac |
21457707 |
T |
|
| Q |
121 |
ttgaatgg-tttaaaaacatgcctatcac |
148 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |
|
|
| T |
21457708 |
ttgaatggttttaaaaacatgcatatcac |
21457736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 28445485 - 28445582
Alignment:
| Q |
23 |
caatgcaagaatttctgattttggattagccaagttgttgaacatgaatcaaagcaaaaccaacactggcataagaggaacaaaagggtatgttgcac |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||| || ||||||||| | ||| | ||||| ||||||||||| || || |||||||||| |
|
|
| T |
28445485 |
caatgcaagaatttcagattttggattagcaaagttattgttgattaatcaaagccataccgaaactggaataagaggaactaagggatatgttgcac |
28445582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 280
Target Start/End: Original strand, 28445708 - 28445739
Alignment:
| Q |
249 |
attttaactgattgggcttatgattgctacaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28445708 |
attttaactgattgggcttatgattgctacaa |
28445739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 28488302 - 28488343
Alignment:
| Q |
236 |
tgaagacaaagcaattttaactgattgggcttatgattgcta |
277 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
28488302 |
tgaagaaaaagggattttaactgattgggcttatgattgcta |
28488343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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