View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10101_low_24 (Length: 250)
Name: NF10101_low_24
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 21835687 - 21835929
Alignment:
| Q |
1 |
caggaaagatggttgcagttcaaagaaatttaagcaagtttggaattaaagaaatagttagaactggaaaggttccaaagctcatttgagtacctaagaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21835687 |
caggaaagatggttgcagttcaaagaaatttaagcaagtttggaattaaagaaatagctagaactggaaagattccaaagctcatttgagtacctaagaa |
21835786 |
T |
|
| Q |
101 |
ttttgtctattttgtccactttctcattcattgttttattactgttggattaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21835787 |
ttttgtctattttgtccactttctcattcattgttttattactgttggattaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacc |
21835886 |
T |
|
| Q |
201 |
tcattgttactctttattctaattgctgaggttacctatgctt |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21835887 |
tcattgttactctttattctaattgctgaggttacctatgctt |
21835929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 6411761 - 6411636
Alignment:
| Q |
12 |
gttgcagttcaaagaaatttaagcaagtttggaattaaagaaatagttagaactggaaaggttccaaagctcatttgagtacctaagaattttgtctatt |
111 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||| || ||||| ||||| ||| | |||| |
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| T |
6411761 |
gttgcaggtcaaagaaatataagcaagtttggaattaaagaaatagctagaactagaaatgttccaaagctcaatttagtacagaagaaatttctatatt |
6411662 |
T |
|
| Q |
112 |
ttgtccactttctcattcattgtttt |
137 |
Q |
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|||| || |||||||||||||||||| |
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| T |
6411661 |
ttgttcattttctcattcattgtttt |
6411636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 392472 - 392406
Alignment:
| Q |
36 |
aagtttggaattaaagaaatagttagaactggaaaggttccaaagctcatttgagtacctaagaattt |
103 |
Q |
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| T |
392472 |
aagtttgaaattaaagaaatagctagaa-tggaaaggttccaaagcacaactgagtgcctaagaattt |
392406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 6590447 - 6590485
Alignment:
| Q |
16 |
cagttcaaagaaatttaagcaagtttggaattaaagaaa |
54 |
Q |
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| T |
6590447 |
cagttcaaagaaatttaagcatgtttggaattaaagaaa |
6590485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 6414404 - 6414342
Alignment:
| Q |
149 |
attaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacctcattgttact |
211 |
Q |
| |
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||||||||||||||||||||||| || |||||| || ||| |||||||||| ||||||||| |
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| T |
6414404 |
attaatgtgtagttttccaaaatgatttgttgaccggaaaactttattaacctaattgttact |
6414342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 36768806 - 36768905
Alignment:
| Q |
1 |
caggaaagatggttgcagttcaaagaaatttaagcaagtttggaattaaagaaatagttagaactggaaaggttccaaagctcatttgagtacctaagaa |
100 |
Q |
| |
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|||| |||||||||||||| || |||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||| |
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| T |
36768806 |
cagggaagatggttgcagtccagagaaatttcggcaagtttggaattaaagaaatagctagaaccggaaaggttcgaaagctcaactgagtacctaagaa |
36768905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 20480447 - 20480570
Alignment:
| Q |
15 |
gcagttcaaagaaatttaagcaagtttggaattaaagaaatagttagaac-tggaaaggttccaaagctcatttgagtacctaagaattttgtctatttt |
113 |
Q |
| |
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|||||| |||||||||||||||||| ||| ||||| |||||| |||||| ||||| |||| ||||||||| ||||||| | ||||||||| | |||||| |
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| T |
20480447 |
gcagtttaaagaaatttaagcaagtatggcattaaggaaataagtagaacttggaagggttgcaaagctcagttgagtatcaaagaattttttttatttt |
20480546 |
T |
|
| Q |
114 |
gtccactttctcattcattgtttt |
137 |
Q |
| |
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| |||||||||| |||||||||| |
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| T |
20480547 |
attcactttctcaatcattgtttt |
20480570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 28524421 - 28524331
Alignment:
| Q |
48 |
aaagaaatagttagaact-ggaaaggttccaaagctcatttgagtacctaagaattttgtctattttgtccactttctcattcattgtttt |
137 |
Q |
| |
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|||||||||| ||||||| |||||||||||| || | | ||||||| ||||||||| | |||||||| |||||| |||||||||||||| |
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| T |
28524421 |
aaagaaatagctagaacttggaaaggttccagagtttagttgagtataaaagaattttctttattttgttcactttttcattcattgtttt |
28524331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 13472893 - 13472957
Alignment:
| Q |
20 |
tcaaagaaatttaagcaagtttggaattaaagaaatagttagaactggaaaggttccaaagctca |
84 |
Q |
| |
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|||| ||||| ||||||||||| ||||| ||||| || ||||||||||||||| |||||||||| |
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| T |
13472893 |
tcaacgaaatctaagcaagttttgaattgaagaataagctagaactggaaaggtcccaaagctca |
13472957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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