View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10101_low_26 (Length: 250)

Name: NF10101_low_26
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10101_low_26
NF10101_low_26
[»] chr5 (6 HSPs)
chr5 (12-250)||(36202785-36203023)
chr5 (91-250)||(29006218-29006379)
chr5 (95-250)||(11042984-11043139)
chr5 (162-250)||(9851652-9851740)
chr5 (178-232)||(15205202-15205256)
chr5 (93-195)||(28274093-28274197)
[»] chr8 (2 HSPs)
chr8 (87-250)||(12729135-12729298)
chr8 (93-250)||(28696293-28696450)
[»] chr3 (7 HSPs)
chr3 (92-250)||(52653523-52653681)
chr3 (92-232)||(50914636-50914776)
chr3 (161-243)||(16729628-16729709)
chr3 (90-139)||(23686022-23686071)
chr3 (90-139)||(24058259-24058308)
chr3 (93-165)||(2257449-2257521)
chr3 (95-250)||(33709572-33709721)
[»] chr2 (2 HSPs)
chr2 (90-250)||(34681309-34681469)
chr2 (112-250)||(14219096-14219233)
[»] chr4 (9 HSPs)
chr4 (92-250)||(24129552-24129710)
chr4 (93-250)||(20251147-20251303)
chr4 (126-250)||(1516541-1516664)
chr4 (98-236)||(48780085-48780222)
chr4 (93-186)||(122829-122922)
chr4 (122-250)||(1494982-1495110)
chr4 (183-250)||(1533067-1533134)
chr4 (122-169)||(1533134-1533180)
chr4 (195-248)||(46324378-46324431)
[»] chr6 (1 HSPs)
chr6 (95-250)||(28612355-28612508)
[»] chr7 (4 HSPs)
chr7 (98-220)||(12239862-12239983)
chr7 (86-215)||(1840394-1840523)
chr7 (148-220)||(24533212-24533284)
chr7 (111-232)||(24870206-24870326)
[»] scaffold0007 (2 HSPs)
scaffold0007 (98-248)||(215646-215794)
scaffold0007 (91-250)||(217508-217659)
[»] chr1 (3 HSPs)
chr1 (92-248)||(49053554-49053696)
chr1 (91-165)||(49061133-49061207)
chr1 (154-248)||(17458230-17458324)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 36202785 - 36203023
Alignment:
Q  12 acagaaatgacatctcctttatatgcaattgaacgcataagaaaattgtacaaacagacacatgaacattggtgtattaattgtgagagaaattttcaaa 111  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  36202785 acagaaatgacatctcctttatatacaattgaacacataagaaaatcgtacaaccagacacatgaacattggtgtattaattgtgagagaaatttttaaa 36202884  T
Q  112 atatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttt 211  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  36202885 atatatttgaaaagttgcaatggttaaaaagagaccttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaaccattcatgaacaaactcttt 36202984  T
Q  212 taaagggttatttctcttcaccaaatgacataagtttct 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36202985 taaagggttatttctcttcaccaaatgacataagtttct 36203023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 29006218 - 29006379
Alignment:
Q  91 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttag---agaaaaggtgtaatgcttgacaactgaatcaatg 187  Q
    |||||||||||||||| ||||||||| || ||||||||||||  || |||||| | |||||||   | |||| |||||||| || || | |||| |||||    
T  29006218 attgtgagagaaatttccaaaatataattgaaaagttgcaataatt-aaaagagatcttttagaaaaaaaaaagtgtaatgttttacgattgaagcaatg 29006316  T
Q  188 taatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    ||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||    
T  29006317 taaccattcatgaacaaaatcttttaaagggttgtttcccttcaccaaatgacataagtttct 29006379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 11043139 - 11042984
Alignment:
Q  95 tgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcat 194  Q
    |||| |||||||||||||||||||| ||||||| ||  ||||||| | | | |||||||||||||||||||||| ||| | | | ||||||| ||  |||    
T  11043139 tgagtgaaattttcaaaatatatttgaaaagtttcatcggttaaataaagatcttttagagaaaaggtgtaatgtttgtccatttaatcaatctagccat 11043040  T
Q  195 tcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    ||||||||||||||||| ||||||||  || ||| ||||||| ||||| |||||||    
T  11043039 tcatgaacaaactctttcaaagggttgattatctacaccaaaggacatgagtttct 11042984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 9851740 - 9851652
Alignment:
Q  162 tgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    |||| |||||||||| |||| |||| | | ||||||| |||||||||| | ||| |||||||||||||||||||| |||||||||||||    
T  9851740 tgtattgcttgacaattgaagcaatctgaccattcataaacaaactctgtcaaatggttatttctcttcaccaaaagacataagtttct 9851652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 15205202 - 15205256
Alignment:
Q  178 tgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttctcttcac 232  Q
    |||| ||||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  15205202 tgaagcaatgtaatcattcatgaacaaactcttacaaatggttatttctattcac 15205256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 28274197 - 28274093
Alignment:
Q  93 tgtgagagaaattttcaaaatata--tttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaa 190  Q
    ||||||||||| || |||||||||  |||  ||||||||||||||| || |  |||||||||| |||| | |||| |||||||| | |||| ||||||||    
T  28274197 tgtgagagaaacttccaaaatataaatttggaaagttgcaatggttgaatatgaaccttttagtgaaacgatgtattgcttgactattgaaacaatgtaa 28274098  T
Q  191 tcatt 195  Q
     ||||    
T  28274097 ccatt 28274093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 12729135 - 12729298
Alignment:
Q  87 attaattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaat 186  Q
    |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||| ||||    
T  12729135 attatttgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaatagagaccttttagagaaaaggtgtaatgctcgacaattgaagcaat 12729234  T
Q  187 gtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
     ||| ||||||||| ||||||||| ||||| ||| ||||||||||||| | ||||||| |||||    
T  12729235 ataaccattcatgagcaaactcttctaaagagttgtttctcttcaccacaggacataaatttct 12729298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 250
Target Start/End: Complemental strand, 28696450 - 28696293
Alignment:
Q  93 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatc 192  Q
    |||||||| |||||| ||||||| |   |||||||||||||| |||| ||| | ||||||||||||| ||||||||||| |||| |||| |||||||| |    
T  28696450 tgtgagagtaatttttaaaatatttcgaaaaagttgcaatgggtaaatagagatcttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaacc 28696351  T
Q  193 attcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    |||||||||||||||||| ||||||| | |||||||||||||||  ||||||||||||    
T  28696350 attcatgaacaaactcttctaaagggatgtttctcttcaccaaagaacataagtttct 28696293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 52653523 - 52653681
Alignment:
Q  92 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaat 191  Q
    ||||||||||||||| ||||||||||||  |||||||||||| ||||| | | ||||||||| ||||||||||| || ||||||| |||  ||||||||     
T  52653523 ttgtgagagaaatttccaaaatatatttggaaagttgcaatgattaaataaataccttttagtgaaaaggtgtattgtttgacaattgatgcaatgtaac 52653622  T
Q  192 cattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    |||||||||||||||||||||||| |||| | ||||||||||||| |||| ||||||||    
T  52653623 cattcatgaacaaactcttttaaatggttgtgtctcttcaccaaaggacacaagtttct 52653681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 232
Target Start/End: Complemental strand, 50914776 - 50914636
Alignment:
Q  92 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaat 191  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| ||||| ||     
T  50914776 ttgttagagaaattttcaaaatatatttgaaaagttgcaatggttaaatagagaccttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaac 50914677  T
Q  192 cattcatg-aacaaactcttttaaagggttatttctcttcac 232  Q
    |||||||| |||||||||||  ||| |||| |||||||||||    
T  50914676 cattcatgaaacaaactcttccaaa-ggttttttctcttcac 50914636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 16729628 - 16729709
Alignment:
Q  161 gtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacata 243  Q
    ||||||| |||||| | |||| ||||||||| ||||||||| |||||||||| ||| ||| ||||||||||||||| ||||||    
T  16729628 gtgtaatacttgactattgaagcaatgtaataattcatgaagaaactctttt-aagagttgtttctcttcaccaaaagacata 16729709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 23686022 - 23686071
Alignment:
Q  90 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaa 139  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  23686022 aattgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaa 23686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 24058259 - 24058308
Alignment:
Q  90 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaa 139  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  24058259 aattgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaa 24058308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 2257521 - 2257449
Alignment:
Q  93 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgta 165  Q
    ||||| ||||||||  ||||||||||| ||||||||||||| ||||| ||| ||| |||||||||||| ||||    
T  2257521 tgtgatagaaatttcaaaaatatatttgaaaagttgcaatgcttaaatagagaccatttagagaaaagatgta 2257449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 33709572 - 33709721
Alignment:
Q  95 tgagagaaattttcaaaata---tatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaa--ggtgtaatgcttgacaactgaatcaatgta 189  Q
    |||||||||||| |||||||   |||||  ||||||||||||||||||| || |||||||| | ||||  |||||||||||| |||| |||| |||||||    
T  33709572 tgagagaaatttccaaaataatatatttggaaagttgcaatggttaaaa-gagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaatgta 33709670  T
Q  190 atcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
              |||||| ||||| |||||||| |||| |||||||||| |||||||||||||    
T  33709671 ----------aacaaaatctttcaaagggttctttcccttcaccaaaggacataagtttct 33709721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 34681469 - 34681309
Alignment:
Q  90 aattgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgta 189  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||| | ||||||||||||||||| |||||||| ||||||| |||| ||||||     
T  34681469 aattgtgagagaaattttcaaaatatatttggaatgttgcaatggttaaacataaaccttttagagaaaaagtgtaatgtttgacaattgaagcaatgtt 34681370  T
Q  190 atcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    | |||| ||||||||||||||  |||| ||| ||| ||||| ||||| ||||||| |||||    
T  34681369 accattgatgaacaaactcttcaaaagagttgtttttcttccccaaaagacataaatttct 34681309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 250
Target Start/End: Complemental strand, 14219233 - 14219096
Alignment:
Q  112 atatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttt 211  Q
    |||||||| ||| |||||||| |||||| ||||| |||| |||||||| ||| ||||||| |||| |||| ||||||||||  |||||||| ||||||||    
T  14219233 atatatttgaaatgttgcaatagttaaatagaaatcttt-agagaaaatgtgcaatgctttacaattgaagcaatgtaatcggtcatgaaccaactcttt 14219135  T
Q  212 taaagggttatttctcttcaccaaatgacataagtttct 250  Q
     |||| ||| ||||||||||||||||| |||||||||||    
T  14219134 caaagtgttgtttctcttcaccaaatggcataagtttct 14219096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 24129710 - 24129552
Alignment:
Q  92 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaat 191  Q
    |||||||||||||| |||||||||||||  ||||| |||||||||||| | |  | |||| ||| ||||||||| ||||||| || |||| ||||||||     
T  24129710 ttgtgagagaaattatcaaaatatatttagaaagtcgcaatggttaaatataggctttttggaggaaaggtgtattgcttgataattgaagcaatgtaac 24129611  T
Q  192 cattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    |||||||||||||||||||  ||| ||||||||  ||| ||||||||||||||||||||    
T  24129610 cattcatgaacaaactcttccaaatggttattttccttaaccaaatgacataagtttct 24129552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 20251147 - 20251303
Alignment:
Q  93 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatc 192  Q
    ||||||||||||||| |||||||||||  ||||||||||| |||||| ||| | ||||||||||||| ||||| || |||| || |||| ||||||||      
T  20251147 tgtgagagaaatttttaaaatatatttggaaagttgcaattgttaaatagagatcttttagagaaaaagtgtattgtttgataattgaaacaatgtaact 20251246  T
Q  193 attcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    |||||||||| |||||| |||||  ||| ||| |||| |||||| |||||||||||||    
T  20251247 attcatgaac-aactctcttaaatagttgtttttctttaccaaaggacataagtttct 20251303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 1516664 - 1516541
Alignment:
Q  126 ttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttc 225  Q
    ||||||||||||||| || || |||||||||||||||||| ||||| | || |||  |||| ||| |||||||||||||| ||||| |||||||||||||    
T  1516664 ttgcaatggttaaaa-gagacattttagagaaaaggtgtagtgctttagaaatgacgcaatataaccattcatgaacaaaatctttcaaagggttatttc 1516566  T
Q  226 tcttcaccaaatgacataagtttct 250  Q
      |||||||||||||||||||||||    
T  1516565 cgttcaccaaatgacataagtttct 1516541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 48780222 - 48780085
Alignment:
Q  98 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattca 197  Q
    ||||||||||||||||||||||  |||||||||||| ||||| | | | |||||||||||||||| ||||| ||||||| |||| |||| |||  |||||    
T  48780222 gagaaattttcaaaatatatttggaaagttgcaatgattaaaca-agatcttttagagaaaaggtataatgtttgacaattgaagcaatataactattca 48780124  T
Q  198 tgaacaaactcttttaaagggttatttctcttcaccaaa 236  Q
    |||| ||| |||||| || |||| ||||||| |||||||    
T  48780123 tgaataaattcttttcaaaggttgtttctctacaccaaa 48780085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 186
Target Start/End: Original strand, 122829 - 122922
Alignment:
Q  93 tgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaat 186  Q
    |||||||||||||| |||| ||||||| |||||||||||| |||||| |||||| |||||||||||| ||||| |||||||||| |||| ||||    
T  122829 tgtgagagaaatttccaaagtatatttgaaaagttgcaatagttaaatagaaacattttagagaaaatgtgtattgcttgacaattgaaacaat 122922  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 1495110 - 1494982
Alignment:
Q  122 aaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaac-aaactcttttaaagggtt 220  Q
    ||||||||||||||||||| || ||| |||||||||||||||||| |||| |||  |||| |||| ||| ||||||||||| ||| ||||| ||||| ||    
T  1495110 aaagttgcaatggttaaaa-gagaccatttagagaaaaggtgtaaagctttacagttgaagcaatataaccattcatgaacaaaattctttcaaaggttt 1495012  T
Q  221 atttctcttcaccaaatgacataagtttct 250  Q
     ||||  |||||||||||||||||||||||    
T  1495011 gtttccgttcaccaaatgacataagtttct 1494982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 1533134 - 1533067
Alignment:
Q  183 caatgtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    |||| ||| |||| ||||||||| ||||| |||||||| |||| ||||| ||||||||||||||||||    
T  1533134 caatataaccatttatgaacaaaatctttcaaagggttgtttcccttcatcaaatgacataagtttct 1533067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 1533180 - 1533134
Alignment:
Q  122 aaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgc 169  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||    
T  1533180 aaagttgcaatggttaaaa-gagacctattagagaaaaggtgtaatgc 1533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 46324378 - 46324431
Alignment:
Q  195 tcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagttt 248  Q
    |||||||||||||||| ||||| ||| ||||||||||| | | |||||||||||    
T  46324378 tcatgaacaaactcttctaaagagttgtttctcttcacaagaggacataagttt 46324431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 28612508 - 28612355
Alignment:
Q  95 tgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcat 194  Q
    |||||||||||| |||||||||||| |||  ||| |||||||||| |||  |||||||||| ||||||||| || ||||||| |||| |||| |||  ||    
T  28612508 tgagagaaatttccaaaatatatttaaaa--ttgtaatggttaaatagaggccttttagagcaaaggtgtattgtttgacaattgaagcaatataacaat 28612411  T
Q  195 tcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
    ||||||||||||||||  ||| | || ||| |||||||||||||||||||||||||    
T  28612410 tcatgaacaaactcttccaaatgattgtttttcttcaccaaatgacataagtttct 28612355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 12239983 - 12239862
Alignment:
Q  98 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattca 197  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | | ||||||||| ||||| ||||| |||||||||| |||  |||||||| ||||||    
T  12239983 gagaaatttccaaaatatatttgaaa-gttgcaatggttaaagaaagaccttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattca 12239885  T
Q  198 tgaacaaactcttttaaagggtt 220  Q
    |||||||||||||| ||| ||||    
T  12239884 tgaacaaactctttcaaatggtt 12239862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 1840394 - 1840523
Alignment:
Q  86 tattaattgtgagagaaattttcaaaatat--atttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatc 183  Q
    ||||||||||||||| |||||| |||||||  |||| |||||||||||||||| || ||| |||||||||  ||| |||||||| ||||| || | ||      
T  1840394 tattaattgtgagagtaatttttaaaatataaatttgaaaagttgcaatggtt-aagagagaccttttag-taaatggtgtaattcttgataattcaagt 1840491  T
Q  184 aatgtaatcattcatgaacaaactcttttaaa 215  Q
    | ||||| |||||||||||||| |||| ||||    
T  1840492 attgtaaccattcatgaacaaattcttctaaa 1840523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Original strand, 24533212 - 24533284
Alignment:
Q  148 ttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggtt 220  Q
    ||||||||||||  ||||||| || |||| || | |||||||| ||||||||||||||| |||| ||||||||    
T  24533212 ttttagagaaaatatgtaatgtttaacaattgtagcaatgtaaccattcatgaacaaacactttcaaagggtt 24533284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 24870206 - 24870326
Alignment:
Q  111 aatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactctt 210  Q
    |||| |||| |||||||||||| |||||||  | ||||||||| |||| |||||||||| |||  | |||| || | ||| | || || |||||||||||    
T  24870206 aataaatttgaaaagttgcaatagttaaaat-agaccttttagtgaaagggtgtaatgcgtgatcaatgaagcagtctaaccgtttattaacaaactctt 24870304  T
Q  211 ttaaagggttatttctcttcac 232  Q
     ||||  |||||||||||||||    
T  24870305 ctaaatagttatttctcttcac 24870326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 248
Target Start/End: Original strand, 215646 - 215794
Alignment:
Q  98 gagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaatcattca 197  Q
    ||||||||| ||||||||||||  |||||||||||||||||| ||| | |||||  ||||||  ||||||| ||||| | ||||    ||||| ||||||    
T  215646 gagaaatttccaaaatatatttagaaagttgcaatggttaaatagagatcttttgaagaaaatatgtaatgtttgacgattgaagt--tgtaaccattca 215743  T
Q  198 tgaacaaactcttttaaagggttatttctcttcaccaaatgacataagttt 248  Q
    | ||||||  | |||||||||| |||||||||||||||| |||||||||||    
T  215744 taaacaaatccatttaaagggtcatttctcttcaccaaaggacataagttt 215794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 217508 - 217659
Alignment:
Q  91 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaa 190  Q
    |||||||||||||||| | ||||||| |  ||||||||||||||||||| ||| | ||||||||||||| | ||||| ||||||     |||||| | |     
T  217508 attgtgagagaaatttccgaaatataataaaaaagttgcaatggttaaatagagatcttttagagaaaatgcgtaattcttgac-----aatcaaagca- 217601  T
Q  191 tcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagtttct 250  Q
      ||||||| ||||||||||| ||| |||| ||| |||| ||||||||||||||||||||    
T  217602 --attcatggacaaactctttcaaaaggttgtttatctttaccaaatgacataagtttct 217659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 49053554 - 49053696
Alignment:
Q  92 ttgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgtaatgcttgacaactgaatcaatgtaat 191  Q
    ||||||||||||||| ||||||||||||  |||||||||||||||||| | | ||||||||| ||||||||||| |||              |||||||     
T  49053554 ttgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttagtgaaaaggtgtattgc--------------aatgtaac 49053639  T
Q  192 cattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagttt 248  Q
    ||||||| |||||||||||| ||| | || | ||||||||||||| |||||||||||    
T  49053640 cattcataaacaaactctttcaaatgattgtgtctcttcaccaaaggacataagttt 49053696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 49061133 - 49061207
Alignment:
Q  91 attgtgagagaaattttcaaaatatatttcaaaagttgcaatggttaaaaagaaaccttttagagaaaaggtgta 165  Q
    |||||||||||||||| ||||||||||||  |||||||||||||||||| | | ||||||||| ||| |||||||    
T  49061133 attgtgagagaaatttccaaaatatatttggaaagttgcaatggttaaataaagaccttttagtgaataggtgta 49061207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 17458230 - 17458324
Alignment:
Q  154 agaaaaggtgtaatgcttgacaactgaatcaatgtaatcattcatgaacaaactcttttaaagggttatttctcttcaccaaatgacataagttt 248  Q
    |||||||  |||||| ||||||| | |  |||||||| |||||| ||||||| ||||| ||   ||| ||||||||||||||| |||||||||||    
T  17458230 agaaaagaagtaatgtttgacaattcatgcaatgtaaccattcaagaacaaattctttcaagtagttgtttctcttcaccaaaggacataagttt 17458324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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