View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10101_low_3 (Length: 681)
Name: NF10101_low_3
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 250 - 670
Target Start/End: Complemental strand, 49841558 - 49841144
Alignment:
| Q |
250 |
gtttaatgatagtggaattaactaaattaaccattatatcgataactatcgatgtttgaactcttaacgttacaaattaaacttattaaaaaacaatcaa |
349 |
Q |
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| T |
49841558 |
gtttaatgatagtggaattaactaaattaaccattata------actatcgaggtttgaactcttaacgttacaaattaaacttattaaaaaacaatcaa |
49841465 |
T |
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| Q |
350 |
ctctcgttatcataaacactcatctaccttctcgtcatggaagctcacagcttctcttcaactctcaaactctttcttctctagttcatcgactacaagt |
449 |
Q |
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| T |
49841464 |
ctctcgttatcataaacacccatctaccttctcgtcatggaagctcacaacttctcttcaactctcaaactctttcttctctggttcatcgactacaagt |
49841365 |
T |
|
| Q |
450 |
cttgtggatagatgggttcaatggaattcttttaatcatagttgcatcgttattaatgttgacttcgtcacccttttaggttttatatctcaggttacat |
549 |
Q |
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| T |
49841364 |
cttgtggatagatgggttcaatggaattcttttaatcatagttgcatcgttattaatgttgactttgtcacccttctaggttttatatctcaggttacat |
49841265 |
T |
|
| Q |
550 |
tccaggttgatctgacatccttcgtgttgaacttcatgtgagttgccgagagtcgttactgaataagaagttgaactttctaattgttatttgctacatg |
649 |
Q |
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| T |
49841264 |
ttcaggtgcatctgacatccttcgtgttgaacttcatgtgatttgccgagagtcgttattgaataagaagttgaactttctaattgttatttgctacatg |
49841165 |
T |
|
| Q |
650 |
cattcccttcattgtattcat |
670 |
Q |
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| T |
49841164 |
cattcccttcattgtattcat |
49841144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 49841781 - 49841571
Alignment:
| Q |
16 |
caataaacattatgaaatctatttctttatttgatggatattaaagaaaagacgaatctaaatgtgtagttgagatataagaaaaattatgagatttaca |
115 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49841781 |
caataaacattatgaaatctatttctacatttgatggatattaaagaaaagacgaatctaaatgtgtagttgagatataagaaacattatgagatttaca |
49841682 |
T |
|
| Q |
116 |
tttgttgggattcattcccacactttactccagtatatgataaagtcggagaccctttatttttcaaaagaaatagtaaaagattttacttatagtgaga |
215 |
Q |
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| T |
49841681 |
tttgttgggattcattcccacactttactccagtatatgataaagtcggagaccctttatttttcaaaagaaatagtaaaagattttacttatagtgaga |
49841582 |
T |
|
| Q |
216 |
taaatacattc |
226 |
Q |
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| T |
49841581 |
taaatacattc |
49841571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 511
Target Start/End: Complemental strand, 47709703 - 47709609
Alignment:
| Q |
417 |
aactctttcttctctagttcatcgactacaagtcttgtggatagatgggttcaatggaattcttttaatcatagttgcatcgttattaatgttga |
511 |
Q |
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||||||| |||||||||||||||| | ||||||| | | || | |||||||||||||||||||| |||||| | |||| || || |||||||||| |
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| T |
47709703 |
aactcttgcttctctagttcatcggcaacaagtcatctcgacaaatgggttcaatggaattcttctaatcacaattgcgtcattcttaatgttga |
47709609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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