View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10101_low_30 (Length: 243)

Name: NF10101_low_30
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10101_low_30
NF10101_low_30
[»] chr5 (7 HSPs)
chr5 (1-238)||(36203072-36203308)
chr5 (137-238)||(9851310-9851410)
chr5 (137-220)||(15205483-15205566)
chr5 (1-139)||(29006465-29006603)
chr5 (66-134)||(9080655-9080724)
chr5 (2-123)||(9851458-9851578)
chr5 (163-220)||(29006661-29006718)
[»] chr3 (5 HSPs)
chr3 (1-137)||(33709810-33709945)
chr3 (1-144)||(52653754-52653896)
chr3 (137-232)||(52653924-52654019)
chr3 (2-134)||(40574317-40574449)
chr3 (137-232)||(33709981-33710075)
[»] chr1 (4 HSPs)
chr1 (15-133)||(49053788-49053905)
chr1 (137-238)||(49053944-49054045)
chr1 (3-139)||(49061355-49061491)
chr1 (137-238)||(49061524-49061625)
[»] chr8 (4 HSPs)
chr8 (2-133)||(12729372-12729502)
chr8 (137-215)||(28696007-28696085)
chr8 (137-238)||(12729541-12729642)
chr8 (137-220)||(44729228-44729311)
[»] scaffold0007 (1 HSPs)
scaffold0007 (3-133)||(217731-217861)
[»] chr7 (3 HSPs)
chr7 (137-227)||(12239499-12239590)
chr7 (3-133)||(12239628-12239757)
chr7 (137-186)||(24870567-24870616)
[»] chr6 (3 HSPs)
chr6 (51-133)||(11931984-11932066)
chr6 (137-220)||(11932104-11932187)
chr6 (2-139)||(28612144-28612281)
[»] chr4 (3 HSPs)
chr4 (51-134)||(20251439-20251523)
chr4 (16-139)||(24391830-24391951)
chr4 (164-238)||(48779725-48779799)
[»] chr2 (1 HSPs)
chr2 (46-122)||(34681118-34681195)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36203072 - 36203308
Alignment:
Q  1 taaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgataca 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  36203072 taaattctgccgaaaattatactaaattattcgttctcttctttag-tgtacgagagaatttgtcagaactttattttgtaagctaccattgcagataca 36203170  T
Q  101 cttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  36203171 cttgatgtgaacgtgcaagtcacgtcaaggattctattgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacac 36203270  T
Q  201 gccatggaatttatgtgcacaattcatgatgtccatct 238  Q
    |||||| |||||||||||||||||||| |||| |||||    
T  36203271 gccatgaaatttatgtgcacaattcattatgttcatct 36203308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 9851410 - 9851310
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatgatgtccat 236  Q
    |||||| ||||| || |||||||| |||| |||| |||| |||| ||||||||| |||||||||||  ||||||||||||||||||||||| |||| |||    
T  9851410 ttgcattcggttggcttaactggt-agggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcat 9851312  T
Q  237 ct 238  Q
    ||    
T  9851311 ct 9851310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 15205483 - 15205566
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 220  Q
    |||||||| ||  |||||||||||| || |||||||||| | || ||||||||| |||||||||||  || |||||||| ||||    
T  15205483 ttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcac 15205566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 29006465 - 29006603
Alignment:
Q  1 taaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaag-ctaccattgtcgatac 99  Q
    ||||||||||  | ||||||||||||| |||| |||| || | ||| || |||||| || ||| |||||||||||| |||||  ||| ||||| ||||||    
T  29006465 taaattctgctaaaaattatactaaatcattcattcttttttctag-tgcacgagataagttgacagaactttattctgtaaaactaacattgacgatac 29006563  T
Q  100 acttgatgtgaacgtgcaagtcacgtcaaggattctattg 139  Q
     |||| |||||| ||| | |||| ||||||||||| ||||    
T  29006564 gcttggtgtgaatgtgtatgtcatgtcaaggattccattg 29006603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 9080724 - 9080655
Alignment:
Q  66 agaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 134  Q
    ||||||||||||||||| ||||||||| || ||||  || ||||||| |||||||| |||||||| ||||    
T  9080724 agaactttattttgtaaactaccattgatctatacgtttaatgtgaatgtgcaagttacgtcaagaattc 9080655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 9851578 - 9851458
Alignment:
Q  2 aaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacac 101  Q
    |||||||||| | ||| ||||||||| | || |||| |||| ||| || || ||||||| || || ||||||||| |||||   |||||||||||||| |    
T  9851578 aaattctgccaaaaataatactaaatcagtctttcttttctctag-tgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgc 9851480  T
Q  102 ttgatgtgaacgtgcaagtcac 123  Q
    ||| |||||| |||||| ||||    
T  9851479 ttggtgtgaatgtgcaaatcac 9851458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 29006661 - 29006718
Alignment:
Q  163 gggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 220  Q
    ||||||||||||| |||| ||||||||| | |||||||||  || |||||||||||||    
T  29006661 gggcgaatcgaacctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcac 29006718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 33709810 - 33709945
Alignment:
Q  1 taaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgataca 100  Q
    |||||| |||||| ||||||||||||| |||| |||| |||| ||| || || |||||||||| |||||||||||| ||||| ||||||||||||||||     
T  33709810 taaattttgccgaaaattatactaaatcattctttcttttctctag-tgcaccagagaatttgacagaactttattctgtaaactaccattgtcgatacg 33709908  T
Q  101 cttgatgtgaacgtgcaagtcacgtcaaggattctat 137  Q
    |||| |||||| |||||||||||||||||||||||||    
T  33709909 cttggtgtgaatgtgcaagtcacgtcaaggattctat 33709945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 52653754 - 52653896
Alignment:
Q  1 taaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgataca 100  Q
    |||||||||| || ||||||||||||| |||| | || |||| ||| || |||||  || ||| |||||||||||| ||||| |||||||||||||||||    
T  52653754 taaattctgctgaaaattatactaaatcattcttacttttctctag-tgcacgaggaaaattgacagaactttattctgtaaactaccattgtcgataca 52653852  T
Q  101 cttgatgtgaacgtgcaagtcacgtcaaggattctattgcatcc 144  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||    
T  52653853 cttgatgtgaatgtgcaagtcacgtcaaggattccattgtatcc 52653896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 52653924 - 52654019
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatgatgt 232  Q
    |||||||||||| ||||||||||||||||||||| |||| |||| ||||||||| |||||||||||  ||||||||||||||||| ||||| ||||    
T  52653924 ttgcatccggttggcataactggtgagggcgaattgaacctaaaggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgt 52654019  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 40574449 - 40574317
Alignment:
Q  2 aaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattg-tcgataca 100  Q
    |||||||||||| ||| ||| ||||| |||| |||| |||| ||| || ||||||||| ||| |||||||||||| ||||| ||| ||||| | |||||     
T  40574449 aaattctgccgaaaataatattaaatcattctttcttttctctag-tgcacgagagaaattgacagaactttattctgtaaactatcattgattgatacg 40574351  T
Q  101 cttgatgtgaacgtgcaagtcacgtcaaggattc 134  Q
    |||  |||||| |||||||||||||||| |||||    
T  40574350 cttcgtgtgaatgtgcaagtcacgtcaaagattc 40574317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 33709981 - 33710075
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatgatgt 232  Q
    ||||||||||||  |||||||||||  || ||||||| | |||| ||||||||| |||||||||||  ||||||||| ||||||| ||||| ||||    
T  33709981 ttgcatccggttgacataactggtggaggtgaatcgatcctaaaggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgt 33710075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 49053788 - 49053905
Alignment:
Q  15 aattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgt 114  Q
    ||||||||||||| |||| ||||||||| ||| || ||||| ||| ||| |||||||||||||||||| |||||||||||||||  |||| |||||| ||    
T  49053788 aattatactaaatcattctttctcttctctag-tgcacgagggaaattggcagaactttattttgtaaactaccattgtcgatatgcttggtgtgaatgt 49053886  T
Q  115 gcaagtcacgtcaaggatt 133  Q
    |||||||||||||||||||    
T  49053887 gcaagtcacgtcaaggatt 49053905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 49053944 - 49054045
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatgatgtccat 236  Q
    |||||||| ||| | |||||||||| ||||||||||||| |||| ||||||||  |||||||||||  ||||||||||||| ||| ||||| |||| |||    
T  49053944 ttgcatccagttggtataactggtgggggcgaatcgaacctaaaggttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcat 49054043  T
Q  237 ct 238  Q
    ||    
T  49054044 ct 49054045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 49061355 - 49061491
Alignment:
Q  3 aattctgccgataa-ttatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacac 101  Q
    ||||||||||| || ||||||||||| |||| |||| |||| ||| || ||||| ||| ||| || ||||||||| ||||| |||||||||||||||       
T  49061355 aattctgccgaaaaattatactaaatcattctttcttttctctag-tgcacgagggaaattgacaaaactttattctgtaaactaccattgtcgatatgt 49061453  T
Q  102 ttgatgtgaacgtgcaagtcacgtcaaggattctattg 139  Q
    ||| |||||| |||||| ||||||||||||||| ||||    
T  49061454 ttggtgtgaatgtgcaaatcacgtcaaggattccattg 49061491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 49061524 - 49061625
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatgatgtccat 236  Q
    |||||||  ||| |||||||||||| ||||||||||||| ||||   ||||||  |||||||||||  | ||||||||||||||| ||||| |||| |||    
T  49061524 ttgcatctagttggcataactggtgggggcgaatcgaacctaaagactagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcat 49061623  T
Q  237 ct 238  Q
    ||    
T  49061624 ct 49061625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 12729372 - 12729502
Alignment:
Q  2 aaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacac 101  Q
    |||||||||||| ||||||||||||| |||| |||| |||| ||| || ||||||||| ||| ||||||||||||  |||| |||| ||||||||||  |    
T  12729372 aaattctgccgaaaattatactaaataattctttcttttctctag-tgcacgagagaaattgacagaactttattcagtaaactacaattgtcgatatgc 12729470  T
Q  102 ttgatgtgaacgtgcaagtcacgtcaaggatt 133  Q
    ||| |||||| |||||||||| ||||||||||    
T  12729471 ttggtgtgaatgtgcaagtcatgtcaaggatt 12729502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 28696085 - 28696007
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatg 215  Q
    ||||||| ||||  ||||||||||||||||||||| ||| |||| ||||||||| |||||||||||  |||||||||||    
T  28696085 ttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatg 28696007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 12729541 - 12729642
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatgatgtccat 236  Q
    |||||||||||| ||||||||||||  ||||||||| || |||| ||||||||| ||||||||| |  ||||||| ||||| ||  ||||| |||| |||    
T  12729541 ttgcatccggttggcataactggtggaggcgaatcgtacctaaaggttagtgtgtcccacacactctttggaattcatgtgtacttttcatcatgttcat 12729640  T
Q  237 ct 238  Q
    ||    
T  12729641 ct 12729642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 44729228 - 44729311
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 220  Q
    |||||||||||| |||||||| |   ||| |||| |||| |||| ||||||||  |||||||||||  ||||||||||||||||    
T  44729228 ttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcac 44729311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 217731 - 217861
Alignment:
Q  3 aattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacac 101  Q
    ||||||||||| ||| || |||||| |||| |||| |||| ||| |  ||||||||| ||| |||||| ||||||||||| ||||||||| |||||||||    
T  217731 aattctgccgaaaataattctaaataattctttcttttctctagttc-acgagagaaattggcagaacattattttgtaaactaccattgatcgatacac 217829  T
Q  102 ttgatgtgaacgtgcaagtcacgtcaaggatt 133  Q
    ||| |||||| ||||||||| | |||||||||    
T  217830 ttggtgtgaatgtgcaagtctcttcaaggatt 217861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 12239590 - 12239499
Alignment:
Q  137 ttgcatccggtttg-cataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcat 227  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||| |||| |||| |||||||||||  || |||||||||||||| |||||    
T  12239590 ttgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcat 12239499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 12239757 - 12239628
Alignment:
Q  3 aattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacact 102  Q
    ||||||||||| ||| ||| |||||||||| ||||  ||| ||| | ||| ||| || ||| || ||||||||| || || |||||||||||||||| ||    
T  12239757 aattctgccgaaaataatattaaattattctttcttatctctag-tatactagataaattgacaaaactttattctggaaactaccattgtcgatacgct 12239659  T
Q  103 tgatgtgaacgtgcaagtcacgtcaaggatt 133  Q
    || |||||| |||||||||||||||||||||    
T  12239658 tggtgtgaatgtgcaagtcacgtcaaggatt 12239628  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 24870567 - 24870616
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttag 186  Q
    |||||||||||| |||||||||||  |||||||||||||||||| |||||    
T  24870567 ttgcatccggttggcataactggtaggggcgaatcgaacttaaaggttag 24870616  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 11931984 - 11932066
Alignment:
Q  51 acgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtgcaagtcacgtcaaggatt 133  Q
    ||||||||||||| ||||| |||||| | ||| ||||||||||||||| ||||| ||||||   ||||||||| |||||||||    
T  11931984 acgagagaatttgacagaattttattctataaactaccattgtcgataaacttggtgtgaataagcaagtcacatcaaggatt 11932066  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 11932104 - 11932187
Alignment:
Q  137 ttgcatccggtttgcataactggtgagggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcac 220  Q
    |||||||||||| |||||||| ||| ||||||||| ||| |||| ||||||||| || ||||| ||  || |||||||||||||    
T  11932104 ttgcatccggttggcataactagtgggggcgaatcaaacctaaaggttagtgtgtccaacacatgctttgaaatttatgtgcac 11932187  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 28612281 - 28612144
Alignment:
Q  2 aaattctgccgataattatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattg-tcgataca 100  Q
    |||||||||||| ||||||||||||| |||| ||||  ||| || ||| ||||| | | ||| |||||| || |||||||  |||||||||  |||||      
T  28612281 aaattctgccgaaaattatactaaatcattctttcttatctcta-gtgcacgaggggaattgacagaacattgttttgtatactaccattgaacgatatg 28612183  T
Q  101 cttgatgtgaacgtgcaagtcacgtcaaggattctattg 139  Q
    |||| |||||| || ||||||||||||||||||| ||||    
T  28612182 cttggtgtgaatgtacaagtcacgtcaaggattccattg 28612144  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 20251439 - 20251523
Alignment:
Q  51 acgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtcacgtcaaggattc 134  Q
    ||||||||| ||| |||||||||||| ||||| ||| ||||| ||||||||||||||||||| || |||| ||| |||| |||||    
T  20251439 acgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaaggcacatcaatgattc 20251523  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 24391830 - 24391951
Alignment:
Q  16 attatactaaattattcgttctcttctttaggtgtacgagagaatttgtcagaactttattttgtaagctaccattgtcgatacacttgatgtgaacgtg 115  Q
    |||||||||||| |||| |||| |||| ||| || | ||||||| ||| || ||||||||| ||||| ||| ||||||||||||  ||| |||| | |||    
T  24391830 attatactaaatcattctttcttttctctag-tgcatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtg-atgtg 24391927  T
Q  116 caagtcacgtcaaggattctattg 139  Q
    ||||||||  ||||||||| ||||    
T  24391928 caagtcacaccaaggattccattg 24391951  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 48779799 - 48779725
Alignment:
Q  164 ggcgaatcgaacttaaacgttagtgtggcccacacacgccatggaatttatgtgcacaattcatgatgtccatct 238  Q
    |||||||||||| |||| ||||||||  |||||||||||  || ||||||| |||||| ||||| |||| |||||    
T  48779799 ggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatct 48779725  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 34681195 - 34681118
Alignment:
Q  46 ggtgtacgagagaatttgtcagaactttattttgtaagctaccattg-tcgatacacttgatgtgaacgtgcaagtca 122  Q
    |||| ||||||||| ||| || |||||||||  |||| ||| ||||| ||||||| ||||||||||| ||||||||||    
T  34681195 ggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca 34681118  T

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