View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10101_low_33 (Length: 240)

Name: NF10101_low_33
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10101_low_33
NF10101_low_33
[»] chr4 (2 HSPs)
chr4 (1-225)||(21835377-21835601)
chr4 (73-113)||(27112157-27112197)
[»] chr5 (2 HSPs)
chr5 (73-114)||(26718885-26718926)
chr5 (73-114)||(26988629-26988670)
[»] chr6 (1 HSPs)
chr6 (73-113)||(2477525-2477565)
[»] chr1 (1 HSPs)
chr1 (73-113)||(6221810-6221850)
[»] chr2 (3 HSPs)
chr2 (73-108)||(11952534-11952569)
chr2 (73-127)||(37182766-37182820)
chr2 (73-114)||(12694801-12694842)
[»] chr8 (1 HSPs)
chr8 (73-134)||(39332327-39332388)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21835601 - 21835377
Alignment:
Q  1 cccaactaacaatcacaactgcaaaaatatagatccagcggctagatactaccagaactttgggctagatccttttattacgggtctcttttcactttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21835601 cccaactaacaatcacaactgcaaaaatatagatccagcggctagatactaccagaactttgggctagatccttttattacgggtctcttttcactttca 21835502  T
Q  101 gaaccgagtctccgaaaacttaggaacagccctgctattcatatatacctaaataaatgtgttattaagacacaaatacatatagagtttttgtcattcg 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21835501 gaaccgagtctccgaaaacttaggaacggccctgctattcatatatacctaaataaatgtgttattaagacacaagtacatatagagtttttgtcattcg 21835402  T
Q  201 tattgaagctcatatatgctataac 225  Q
    |||||||||||||||||||||||||    
T  21835401 tattgaagctcatatatgctataac 21835377  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 27112157 - 27112197
Alignment:
Q  73 ttttattacgggtctcttttcactttcagaaccgagtctcc 113  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  27112157 ttttattacgggtctcttttcacttacagaaccgagcctcc 27112197  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 26718926 - 26718885
Alignment:
Q  73 ttttattacgggtctcttttcactttcagaaccgagtctccg 114  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  26718926 ttttattacgggtctcttttcacttacagaaccgagcctccg 26718885  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 26988670 - 26988629
Alignment:
Q  73 ttttattacgggtctcttttcactttcagaaccgagtctccg 114  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  26988670 ttttattacgggtctcttttcacttacagaaccgagcctccg 26988629  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 2477565 - 2477525
Alignment:
Q  73 ttttattacgggtctcttttcactttcagaaccgagtctcc 113  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  2477565 ttttattacgggtctcttttcacttacagaaccgagcctcc 2477525  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 6221810 - 6221850
Alignment:
Q  73 ttttattacgggtctcttttcactttcagaaccgagtctcc 113  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  6221810 ttttattacgggtctcttttcatttacagaaccgagtctcc 6221850  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 11952569 - 11952534
Alignment:
Q  73 ttttattacgggtctcttttcactttcagaaccgag 108  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11952569 ttttattacgggtctcttttcacttacagaaccgag 11952534  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 37182766 - 37182820
Alignment:
Q  73 ttttattacgggtctcttttcactttcagaaccgagtctccgaaaacttaggaac 127  Q
    ||||||||||||||||||||||||| |||| ||||| ||||| |  |||||||||    
T  37182766 ttttattacgggtctcttttcacttacagagccgagcctccggattcttaggaac 37182820  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 12694801 - 12694842
Alignment:
Q  73 ttttattacgggtctcttttcactttcagaaccgagtctccg 114  Q
    ||||||||||||||||||||||||| |||| ||||| |||||    
T  12694801 ttttattacgggtctcttttcacttacagagccgagcctccg 12694842  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 39332388 - 39332327
Alignment:
Q  73 ttttattacgggtctcttttcactttcagaaccgagtctccgaaaacttaggaacagccctg 134  Q
    |||||||||| |||||||||||| | |||||||||| |||||||  | ||||||| ||||||    
T  39332388 ttttattacgagtctcttttcacctacagaaccgagcctccgaattcgtaggaacggccctg 39332327  T

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