View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10101_low_36 (Length: 239)
Name: NF10101_low_36
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8812890 - 8813113
Alignment:
| Q |
1 |
cataaaaaatattaaaaacaaagtctaaaagaattcacaataatgttattaccagagcgtcaggatgaagtctataatcaatatacatggtccaatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8812890 |
cataaaaaatattaaaaacaaagtctaaaacaattcacaataatgttattaccagagcgtcaggatgaagtctataatcaatatacatggtccaatgatc |
8812989 |
T |
|
| Q |
101 |
ttcgccaacttcactcgagaatttctctatattttgcttaacgcgaagagaccaatcataatttgtgctatatatctggtgatcttcattgttgaattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
8812990 |
ttcgccaacttcactcgagaatttctctatattttgcttaacgctaagagaccaatcataatttgtgttaaatatctggtgatcttcattgttgaattga |
8813089 |
T |
|
| Q |
201 |
atttcaaactgctcctagtatatg |
224 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
8813090 |
atttcaatctgctcctagtatatg |
8813113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University