View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10101_low_37 (Length: 236)
Name: NF10101_low_37
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 24640498 - 24640333
Alignment:
| Q |
16 |
tttgtcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtagttaatacatgtattatttgcagagttcagcagac |
115 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24640498 |
tttgtcactgtacttaaggagcgtgaagaatttacaattaattccaactgtttcgaaaaatggtagttaatacatgtattatttgcagagttcagcaaa- |
24640400 |
T |
|
| Q |
116 |
ctcctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattctttttggtggtctcctt |
184 |
Q |
| |
|
||| |||| | |||||||| |||||||||| | || ||| ||||||||||||||| | ||||||||| |
|
|
| T |
24640399 |
--cctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattctttttagaggtctcctt |
24640333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 24675599 - 24675431
Alignment:
| Q |
14 |
gatttgtcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtagttaatacatgtattatttgcagagttcagcag |
113 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24675599 |
gatttgtcattgtacttgaggagcgtgaagaacttacaattcattgaaactgtttcgaaaaatggtagttaatacgtgtattatttgcagagttcagcaa |
24675500 |
T |
|
| Q |
114 |
acctcctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattctttttggtggtctccttg |
185 |
Q |
| |
|
| ||| |||| | |||||||| ||||||||||||||| | |||||||||||||||| |||||||||| |
|
|
| T |
24675499 |
a---cctgaagccacattatgcagcctgtttttctcatatagctgggatgattctttttaaaggtctccttg |
24675431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 24691690 - 24691546
Alignment:
| Q |
25 |
gtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtagttaatacatgtattatttgcagagttcagcagacctcctcaag |
124 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||| ||| | ||| ||| |
|
|
| T |
24691690 |
gtacttaaggagcatgaagaacttacaattcattgcaactgtttcgaaatatggtagttaatacttgtattatttgcagagttcggcaaa---cctgaag |
24691594 |
T |
|
| Q |
125 |
caatattatgcatcctgtttttctcatagcgttgggatgattcttttt |
172 |
Q |
| |
|
| | |||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
24691593 |
ccacattatgcaatctgtttttctcatatcgctgggatgattcttttt |
24691546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 24719056 - 24718960
Alignment:
| Q |
16 |
tttgtcacagtacttgaggagcatgaagaatttacaattcattgcgactgtttacaaaaatggtagttaatacatgtattatttgcagagttcagca |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24719056 |
tttgtcattgtacttgaggagcatgaagaatttacaattcattgcaactatttcaaaaaatggtagttaatacatgtattatatgcagagttcagca |
24718960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 24652455 - 24652319
Alignment:
| Q |
40 |
gaagaatttacaattcattgcgactgtttacaaaaatggtagttaatacatgtattatttgcagagttcagcagacctcctcaagcaatattatgcatcc |
139 |
Q |
| |
|
||||||| ||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
24652455 |
gaagaatgtacgattcattgcaactgtttcgtaaaattgtagttaatacatgtattatttgcagagttcagcaaa---aatcaagcaatattatgcaacc |
24652359 |
T |
|
| Q |
140 |
tgtttttctcatagcgttgggatgattctttttggtggtct |
180 |
Q |
| |
|
||||||| | || |||||||||||||| ||||||||||| |
|
|
| T |
24652358 |
tgttttt-ttgtacggttgggatgattctatttggtggtct |
24652319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 24686299 - 24686186
Alignment:
| Q |
86 |
tacatgtattatttgcagagttcagcagacctcctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattctttttggtggtctccttg |
185 |
Q |
| |
|
||||||||||||||||||| ||||||| || || ||||||||||||||| |||||||||||| || || ||| ||| ||||||||||||||||||||| |
|
|
| T |
24686299 |
tacatgtattatttgcagaattcagcaaacatc---aagcaatattatgcaacctgtttttctcgtatcgctggaatggttctttttggtggtctccttg |
24686203 |
T |
|
| Q |
186 |
taccctgtgtaagattt |
202 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
24686202 |
cacccaatgtaagattt |
24686186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 24632727 - 24632584
Alignment:
| Q |
35 |
agcatgaagaatttacaattcattgcgactgtttacaaaaatggtagtt-aatacatgtattatttgcagagttcagcagacctcctcaagcaatattat |
133 |
Q |
| |
|
||||||||||||||||| | ||||| | |||| ||||||||||||| || |||||||||||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
24632727 |
agcatgaagaatttacattagattgcaagggtttcgaaaaatggtagtttaacacatgtattatttgcagagttcagcaaa---ccttgagcaatattat |
24632631 |
T |
|
| Q |
134 |
gcatcctgtttttctcatagcgttgggatgattctttttggtggtctcct |
183 |
Q |
| |
|
|| ||||||||||||| || | | | |||||| |||||||||||||||| |
|
|
| T |
24632630 |
gc-tcctgtttttctcgtatcct--gaatgattatttttggtggtctcct |
24632584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 24717142 - 24717081
Alignment:
| Q |
71 |
aaaaatggtagtta-atacatgtattatttgcagagttcagcagacctcctcaagcaatattatg |
134 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
24717142 |
aaaaatggtagtttgatacatgtattatttgcagagttcagcaaa---cctcaagcaatattatg |
24717081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 24713863 - 24713764
Alignment:
| Q |
34 |
gagcatgaagaatttacaattcattgcgactgtttacaaaaatggtagttaatacatgtattatttgcagagttcagcagacctcctcaagcaatattat |
133 |
Q |
| |
|
||||| |||||||||||| || | ||| | |||| ||||||||||||| |||| ||||| || |||||||||||||| | | |||||||||||||| |
|
|
| T |
24713863 |
gagcaggaagaatttacattttagtgcaagggtttcgaaaaatggtagttgatacttgtataatatgcagagttcagcaaa---catcaagcaatattat |
24713767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 4037575 - 4037617
Alignment:
| Q |
129 |
attatgcatcctgtttttctcatagcgttgggatgattctttt |
171 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
4037575 |
attatgcaacctgtttttctcatatcgttgggatgattctttt |
4037617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 12307836 - 12307920
Alignment:
| Q |
118 |
cctcaagcaatattatgcatcctgtttttctcatagcgttgggatgattctttttggtggtctccttgtaccctgtgtaagattt |
202 |
Q |
| |
|
||||| ||| ||||| ||| |||||||||||| || |||||| |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
12307836 |
cctcaggcagtattacgcaacctgtttttctcttattagtgggataattctttttggtggtctccttgctccgagtgtaagattt |
12307920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University