View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10101_low_39 (Length: 235)
Name: NF10101_low_39
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 10982183 - 10981976
Alignment:
| Q |
15 |
caaaggtccagtacagaaaatggatggaataccattaggaataaataatccttcattcaatgctttaattgctcttccttcaataccatcaaaagtgttc |
114 |
Q |
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| T |
10982183 |
caaaggtccagtacagaaaatggatggaataccatcaggaataaataatccttcattcaaagctttaattgctcttccttcaataccatcaaaagtgttc |
10982084 |
T |
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| Q |
115 |
actataatcccatcacattccctcgtagttttcatggaatcaagcatatcttgtaacactttattctcagaaatagaatcattgaatccgtcagggtaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10982083 |
actataatcccatcacattccctcgtagttttcatggaatcaagcatatcttgtaacactttattctcagaaatagaatcattgaatccgtcagggtaat |
10981984 |
T |
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| Q |
215 |
catctgtt |
222 |
Q |
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|||||||| |
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| T |
10981983 |
catctgtt |
10981976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 10968229 - 10968099
Alignment:
| Q |
19 |
ggtccagtacagaaaatggatggaata---ccattaggaataaataatccttcattcaatgctttaattgctcttccttcaataccatcaaaagtgttca |
115 |
Q |
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|||||| |||| |||||||||||| || |||| ||||||| |||||||||||||||| |||||| | ||| |||| |||||| ||||||||||||||| |
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| T |
10968229 |
ggtccaatacaaaaaatggatggagtagttccatcaggaatatataatccttcattcaaagctttattagcttttccctcaatagcatcaaaagtgttca |
10968130 |
T |
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| Q |
116 |
ctataatcccatcacattccctcgtagtttt |
146 |
Q |
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| T |
10968129 |
caataaccccatcacattgcctcatagtttt |
10968099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 11002413 - 11002265
Alignment:
| Q |
15 |
caaaggtccagtacagaaaatggatggaata---ccattaggaataaataatccttcattcaatgctttaattgctcttccttcaataccatcaaaagtg |
111 |
Q |
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|||||||||| |||| |||||||||||| | |||| ||||| | ||| ||||||||||| ||||||| ||| || |||||||| ||||||||||| |
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| T |
11002413 |
caaaggtccaatacaaaaaatggatggagttgttccatcaggaacacataccccttcattcaaacctttaatagctttttcttcaatagcatcaaaagtg |
11002314 |
T |
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| Q |
112 |
ttcactataatcccatcacattccctcgtagttttcatggaatcaagca |
160 |
Q |
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||||| ||||||||| ||||||||||| | |||||| |||||||||| |
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| T |
11002313 |
ttcacaataatcccagcacattccctcattgttttcgccgaatcaagca |
11002265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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