View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10101_low_41 (Length: 217)

Name: NF10101_low_41
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10101_low_41
NF10101_low_41
[»] chr4 (12 HSPs)
chr4 (20-200)||(12677698-12677868)
chr4 (53-200)||(47189459-47189607)
chr4 (98-200)||(25059212-25059315)
chr4 (56-200)||(25950294-25950437)
chr4 (80-196)||(39262019-39262136)
chr4 (80-179)||(37334314-37334414)
chr4 (56-174)||(51290277-51290396)
chr4 (87-200)||(44498281-44498395)
chr4 (45-161)||(42672684-42672801)
chr4 (56-147)||(53924556-53924647)
chr4 (77-200)||(27064770-27064895)
chr4 (77-200)||(27085874-27085999)
[»] chr3 (4 HSPs)
chr3 (55-200)||(35846554-35846698)
chr3 (54-179)||(21890778-21890904)
chr3 (80-174)||(36473500-36473595)
chr3 (83-137)||(14195579-14195633)
[»] chr1 (4 HSPs)
chr1 (57-191)||(44127476-44127611)
chr1 (87-161)||(29865959-29866033)
chr1 (77-106)||(50234337-50234366)
chr1 (87-191)||(43177639-43177743)
[»] chr7 (4 HSPs)
chr7 (51-196)||(9771751-9771897)
chr7 (82-158)||(16888311-16888389)
chr7 (87-179)||(31350557-31350650)
chr7 (80-140)||(29946794-29946854)
[»] chr2 (4 HSPs)
chr2 (104-198)||(36754407-36754502)
chr2 (51-179)||(12434167-12434296)
chr2 (49-123)||(7317165-7317239)
chr2 (82-200)||(34438908-34439020)
[»] chr8 (2 HSPs)
chr8 (56-200)||(1773442-1773586)
chr8 (80-137)||(14049936-14049993)
[»] chr5 (1 HSPs)
chr5 (91-179)||(16283914-16284003)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 12677698 - 12677868
Alignment:
Q  20 ggttgaaccgcggtaaccaaataataaataataggaaaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaa 119  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||  | |||||| |||||||||||||||||||||||||||||||||    
T  12677698 ggttgaaccg-ggtaaacaaataataaataataggaaaatgataacatgtgccccaatggcacatgttaagaaatttaaaatagaaacaattgtctcaaa 12677796  T
Q  120 agttatacatttaactttattcacttttaaaagttaaaatttagttgttttctataaaaagtttctaattttgaattcctt 200  Q
    |||||   ||| |         ||||||||||||||||||||  || |||||| |||||||||||||||||||||||||||    
T  12677797 agttacgtattca---------acttttaaaagttaaaatttcattattttctgtaaaaagtttctaattttgaattcctt 12677868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 47189607 - 47189459
Alignment:
Q  53 ggaaaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattca-cttttaaaa 151  Q
    |||||||| ||||||||||||    | ||||||||||||||||||||||||||| | |||||||||||||| | |||| ||||||||||| |||||||||    
T  47189607 ggaaaatgctaacatgtgcccttggggcacatgctaagaaatttaaaatagaaatagttgtctcaaaagttgtgcattcaactttattcaacttttaaaa 47189508  T
Q  152 gttaaaatttagttgttttctataaaaagtttctaattttgaattcctt 200  Q
    || ||||||| ||||||||||||  ||||||||||||||||||||||||    
T  47189507 gtcaaaattttgttgttttctatggaaagtttctaattttgaattcctt 47189459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 25059212 - 25059315
Alignment:
Q  98 aaatagaaacaattgtctcaaaagttatacatttaactttattca-cttttaaaagttaaaatttagttgttttctataaaaagtttctaattttgaatt 196  Q
    |||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  25059212 aaatagaaacaattgtctcaaaagttgtacattcaactttattcaacttttaaaagtcaaaattttgttgttttttataaaaagtttctaattttgaatt 25059311  T
Q  197 cctt 200  Q
    ||||    
T  25059312 cctt 25059315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 25950437 - 25950294
Alignment:
Q  56 aaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-acttttaaaagtt 154  Q
    ||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||||||  ||||| | |||| || ||||||| || ||| ||||||    
T  25950437 aaatgctaacatgtgccccaaaggcacatgctaagaaatttaaaatagaaataattgtctc--aagttgtgcattcaattttattcaaccttttaaagtt 25950340  T
Q  155 aaaatttagttgttttctataaaaagtttctaattttgaattcctt 200  Q
    ||||||| ||||||||||||  |||| ||||||||||| |||||||    
T  25950339 aaaattttgttgttttctatggaaagcttctaattttgtattcctt 25950294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 39262019 - 39262136
Alignment:
Q  80 cacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattcactttt-aaaagttaaaatttagttgttttctataaaa 178  Q
    |||||| ||| |||||||||| |||||||||||||| |||| || | |||| ||||||||||| |||| |||| | ||||||| ||||||||||||||||    
T  39262019 cacatgttaaaaaatttaaaaaagaaacaattgtcttaaaaattgtgcattcaactttattcaatttttaaaaatcaaaattttgttgttttctataaaa 39262118  T
Q  179 agtttctaattttgaatt 196  Q
    ||||||||||||||||||    
T  39262119 agtttctaattttgaatt 39262136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 37334314 - 37334414
Alignment:
Q  80 cacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattca-cttttaaaagttaaaatttagttgttttctataaaa 178  Q
    |||||||||| |||||||||||||||| |||| | | ||| ||| | |||| ||||||||||| |||||||||||||||||||  |||||||||||||||    
T  37334314 cacatgctaataaatttaaaatagaaataattattttaaaggttttgcattcaactttattcaacttttaaaagttaaaattttattgttttctataaaa 37334413  T
Q  179 a 179  Q
    |    
T  37334414 a 37334414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 51290396 - 51290277
Alignment:
Q  56 aaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttatt-cacttttaaaagtt 154  Q
    ||||| |||||||||||| |  |||| || ||||||||||||||||| ||| |||||||| ||||||| | |||| |||||||||  |||||| ||||||    
T  51290396 aaatgttaacatgtgccctaaggacatatactaagaaatttaaaataaaaataattgtcttaaaagttgtgcattcaactttattaaactttttaaagtt 51290297  T
Q  155 aaaatttagttgttttctat 174  Q
    ||| ||| ||| ||||||||    
T  51290296 aaagttttgttattttctat 51290277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 44498281 - 44498395
Alignment:
Q  87 taagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-acttttaaaagttaaaatttagttgttttctataaaaagtttct 185  Q
    |||| ||||||||||| ||| |||||||| ||||||| | |||| |||||||||| |||||| ||||||||||||| ||| ||||| || ||||  || |    
T  44498281 taaggaatttaaaataaaaataattgtcttaaaagttgtgcattcaactttattcaactttttaaagttaaaattttgttattttcaatgaaaaactttt 44498380  T
Q  186 aattttgaattcctt 200  Q
    | ||||| |||||||    
T  44498381 agttttggattcctt 44498395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 42672684 - 42672801
Alignment:
Q  45 aaataataggaaaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-ac 143  Q
    |||||||| | ||||| |||||||| |||||  |  | |||||||  ||||||||||||||| |||||||| |||| || | |||| |||||||||| ||    
T  42672684 aaataatatgtaaatgctaacatgtaccccaagggtatatgctaaagaatttaaaatagaaataattgtcttaaaaattgtgcattcaactttattcaac 42672783  T
Q  144 ttttaaaagttaaaattt 161  Q
    |||| ||||| |||||||    
T  42672784 tttttaaagtcaaaattt 42672801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 53924556 - 53924647
Alignment:
Q  56 aaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattcactttt 147  Q
    ||||| ||||||||||||||  | ||||||||||| ||||||||||| ||| || || || ||||||| | |||| |||| |||||| ||||    
T  53924556 aaatgttaacatgtgccccaagggcacatgctaaggaatttaaaataaaaataaatgccttaaaagttgtgcattcaactctattcaatttt 53924647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 27064895 - 27064770
Alignment:
Q  77 agacacatgctaagaaatttaaaa-tagaaacaattgtctcaaaagttatacatttaactttattca-cttttaaaagttaaaatttagttgttttctat 174  Q
    |||||| || |||||||||||||| || ||| |||||| | |||| || | |||| ||||||||| | ||||| ||||| || |||| |||| | | |||    
T  27064895 agacacgtgttaagaaatttaaaaataaaaataattgttttaaaaattgtgcattcaactttattaaactttttaaagtcaatattttgttgctgtttat 27064796  T
Q  175 aaaaagtttctaattttgaattcctt 200  Q
    | |||||||||||||||| |||||||    
T  27064795 ataaagtttctaattttggattcctt 27064770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 27085999 - 27085874
Alignment:
Q  77 agacacatgctaagaaatttaaaa-tagaaacaattgtctcaaaagttatacatttaactttattca-cttttaaaagttaaaatttagttgttttctat 174  Q
    |||||| || |||||||||||||| || ||| |||||| | |||| || | |||| ||||||||| | ||||| ||||| || |||| |||| | | |||    
T  27085999 agacacgtgttaagaaatttaaaaataaaaataattgttttaaaaattgtgcattcaactttattaaactttttaaagtcaatattttgttgctgtttat 27085900  T
Q  175 aaaaagtttctaattttgaattcctt 200  Q
    | |||||||||||||||| |||||||    
T  27085899 ataaagtttctaattttggattcctt 27085874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 35846698 - 35846554
Alignment:
Q  55 aaaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattcactttt-aaaagt 153  Q
    |||||||||||||||||||    |||||||| ||| |||||||||| |||||||||||||||||||| | | |||| ||||||||||| |||| ||||||    
T  35846698 aaaatgataacatgtgcccag--gacacatgttaaaaaatttaaaaaagaaacaattgtctcaaaagctgtgcattcaactttattcaatttttaaaagt 35846601  T
Q  154 taaaatttagttgttttctataaaaagtttctaattttgaattcctt 200  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||||    
T  35846600 taaaattttgttattttctataaaaagtttcaaattttgaattcctt 35846554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 21890904 - 21890778
Alignment:
Q  54 gaaaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-acttttaaaag 152  Q
    ||||||||||||||||| ||    | ||||||||||||||| ||||| ||||| ||||||||||||| || | ||||||||||||||| ||||||||||     
T  21890904 gaaaatgataacatgtgtccttagggcacatgctaagaaatataaaaaagaaaaaattgtctcaaaaattgtgcatttaactttattcaacttttaaaaa 21890805  T
Q  153 ttaaaatttagttgttttctataaaaa 179  Q
    | ||||||| |||||||||||||||||    
T  21890804 tcaaaattttgttgttttctataaaaa 21890778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 36473595 - 36473500
Alignment:
Q  80 cacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaacttta-ttcacttttaaaagttaaaatttagttgttttctat 174  Q
    |||||| |||||||||||||||||||| |||| ||| ||||||| | |||| ||||||| || |||||| ||||| ||| ||| ||| ||||||||    
T  36473595 cacatgttaagaaatttaaaatagaaataattttcttaaaagttgtgcattcaactttatttaactttttaaagtcaaagttttgttcttttctat 36473500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 14195579 - 14195633
Alignment:
Q  83 atgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaacttt 137  Q
    |||||||| ||||||||||||||| |||||||| ||||||| | |||| ||||||    
T  14195579 atgctaaggaatttaaaatagaaataattgtcttaaaagttgtgcattcaacttt 14195633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 44127611 - 44127476
Alignment:
Q  57 aatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-acttttaaaagtta 155  Q
    |||||||||||||| ||||  | ||||||||||||||||||||||||||||| |||||| |||| || |  ||| |||||||||| |||||||||||| |    
T  44127611 aatgataacatgtgtcccaagggcacatgctaagaaatttaaaatagaaacatttgtctaaaaaattgtgtattcaactttattcaacttttaaaagtca 44127512  T
Q  156 aaatttagttgttttctataaaaagtttctaatttt 191  Q
    |||||| |||||||||||| ||||||||||||||||    
T  44127511 aaattttgttgttttctatgaaaagtttctaatttt 44127476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 29865959 - 29866033
Alignment:
Q  87 taagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattcacttttaaaagttaaaattt 161  Q
    |||| ||||||||||||||| || ||| | ||||||| |||||| || ||||||||  ||| |||||||||||||    
T  29865959 taaggaatttaaaatagaaataaatgtattaaaagttgtacattcaattttattcaacttttaaagttaaaattt 29866033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 106
Target Start/End: Original strand, 50234337 - 50234366
Alignment:
Q  77 agacacatgctaagaaatttaaaatagaaa 106  Q
    ||||||||||||||||||||||||||||||    
T  50234337 agacacatgctaagaaatttaaaatagaaa 50234366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 43177639 - 43177743
Alignment:
Q  87 taagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattcacttttaaaagttaaaatttagttgttttctataaaaagtttcta 186  Q
    |||| ||||||||||||||| || ||| | ||||||| | |||| ||  |||||||  ||| ||||| ||||||| ||| |||||||| ||||  |||||    
T  43177639 taaggaatttaaaatagaaataaatgtattaaaagttgtgcattcaatcttattcaacttttaaagtcaaaattttgttcttttctatgaaaaacttcta 43177738  T
Q  187 atttt 191  Q
    |||||    
T  43177739 atttt 43177743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 9771897 - 9771751
Alignment:
Q  51 taggaaaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-acttttaa 149  Q
    ||||||||||||||||||||||| |    |||||| ||||||||||||||||||||||  ||||||||||||| | ||||||||||||||| ||||||||    
T  9771897 taggaaaatgataacatgtgccctaagtgcacatgttaagaaatttaaaatagaaacatatgtctcaaaagttgtgcatttaactttattcaacttttaa 9771798  T
Q  150 aagttaaaatttagttgttttctataaaaagtttctaattttgaatt 196  Q
    |||| ||||||| ||| |||| ||  |||||||||||||||| ||||    
T  9771797 aagtcaaaattttgtttttttttacgaaaagtttctaattttaaatt 9771751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 16888311 - 16888389
Alignment:
Q  82 catgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactt-tattc-acttttaaaagttaaaa 158  Q
    ||||||||| ||||||||||| ||| |||| ||| ||||||| |||||| ||||| ||||| |||||||||||| ||||    
T  16888311 catgctaaggaatttaaaataaaaataattctcttaaaagttgtacattcaacttgtattcaacttttaaaagtcaaaa 16888389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 31350650 - 31350557
Alignment:
Q  87 taagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-acttttaaaagttaaaatttagttgttttctataaaaa 179  Q
    |||| ||||||||||||||| |||| ||| |||| || | ||||||||||||||| | ||||  |||| ||||||| ||| ||||| |||||||    
T  31350650 taaggaatttaaaatagaaataattatcttaaaaattctgcatttaactttattcaattttttgaagtcaaaattttgtttttttcaataaaaa 31350557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 29946794 - 29946854
Alignment:
Q  80 cacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttatt 140  Q
    |||||||| |||||||||||||| ||| |||||| | |||| |||| |||| |||||||||    
T  29946794 cacatgctgagaaatttaaaataaaaataattgtttaaaaaattatgcattcaactttatt 29946854  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 36754502 - 36754407
Alignment:
Q  104 aaacaattgtctcaaaagttatacatttaactttattca-cttttaaaagttaaaatttagttgttttctataaaaagtttctaattttgaattcc 198  Q
    |||||||||||||||||||| | |||| ||||||||||| ||||||||||| ||||||| |||||||| ||| |||||||| ||||||||||||||    
T  36754502 aaacaattgtctcaaaagttgtgcattcaactttattcaacttttaaaagtcaaaattttgttgttttttattaaaagtttttaattttgaattcc 36754407  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 179
Target Start/End: Complemental strand, 12434296 - 12434167
Alignment:
Q  51 taggaaaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-acttttaa 149  Q
    |||| ||||| ||||||||||||||  | || ||| |||  ||||||||||| ||| |||||||| ||||||| | |||| |||||||||| |||||| |    
T  12434296 taggcaaatgctaacatgtgccccaagggcatatgttaatgaatttaaaatataaataattgtcttaaaagttgtgcattcaactttattcaacttttta 12434197  T
Q  150 aagttaaaatttagttgttttctataaaaa 179  Q
    |||| ||||||| ||| |||||||||||||    
T  12434196 aagtcaaaattttgttcttttctataaaaa 12434167  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 7317165 - 7317239
Alignment:
Q  49 aataggaaaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagtt 123  Q
    |||||| ||||| |||||||| ||||| || ||||||||||| ||||||||||||||| || ||||| |||||||    
T  7317165 aataggcaaatgttaacatgtaccccaaaggcacatgctaaggaatttaaaatagaaataaatgtcttaaaagtt 7317239  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 34438908 - 34439020
Alignment:
Q  82 catgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-acttttaaaagttaaaatttagttgttttctataaaaag 180  Q
    |||||||||||||||||||||||||||||| |||      || |  |||||| ||||||| | |||||| ||| ||||||| |||||||| ||| |||||    
T  34438908 catgctaagaaatttaaaatagaaacaattatct------ttgtgtatttaaatttattcaaattttaagagtcaaaattttgttgttttttatgaaaag 34439001  T
Q  181 tttctaattttgaattcctt 200  Q
    ||| ||| ||||||||||||    
T  34439002 tttttaa-tttgaattcctt 34439020  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 1773442 - 1773586
Alignment:
Q  56 aaatgataacatgtgccccatagacacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattca-cttttaaaagtt 154  Q
    ||||| |||||||||| |||  |||| |||||||||| ||||||||||||| || ||||| ||| ||| | |||| |  | |||||| ||||| |||||     
T  1773442 aaatgctaacatgtgctccaaggacatatgctaagaa-tttaaaatagaaataaatgtcttaaaggttgtgcattcatttctattcaactttttaaagtc 1773540  T
Q  155 aaaatttagttgttttctataaaaagtttctaattttgaattcctt 200  Q
    ||||||| ||| |||| |||||||   |||||||||||||||||||    
T  1773541 aaaattttgttcttttttataaaataattctaattttgaattcctt 1773586  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 14049993 - 14049936
Alignment:
Q  80 cacatgctaagaaatttaaaatagaaacaattgtctcaaaagttatacatttaacttt 137  Q
    |||||| ||| ||| |||||||||||| |||||||||||| ||| | |||||||||||    
T  14049993 cacatgttaaaaaaattaaaatagaaataattgtctcaaaggttgtgcatttaacttt 14049936  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 16284003 - 16283914
Alignment:
Q  91 aaatttaaaatagaaacaattgtctcaaaagttatacatttaactttattc-acttttaaaagttaaaatttagttgttttctataaaaa 179  Q
    |||||||||||||||| |||||||| ||||||| | |||| | |||||||| |||||| ||||| ||||||| ||| ||||  |||||||    
T  16284003 aaatttaaaatagaaataattgtcttaaaagttgtgcattcatctttattcaactttttaaagtcaaaattttgttctttttaataaaaa 16283914  T

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