View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10101_low_9 (Length: 386)
Name: NF10101_low_9
Description: NF10101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10101_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 147 - 366
Target Start/End: Original strand, 8101081 - 8101300
Alignment:
| Q |
147 |
ccttcttgccacgaagcttccatcctgcgtctcnnnnnnnnnnnnncgccaaaatcatttataaaacaaatattcatttattgaataaaacaaatgatgt |
246 |
Q |
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| T |
8101081 |
ccttcttgccacgaagcttccatcctgcgtctcttttttaatttttcgccaaaatcatttataaaacaaatattcatttattgaataaaacaaataatgt |
8101180 |
T |
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| Q |
247 |
atgtatgtagtttaaggagtatatatttattgttcttttccttttatagattagcacttacttgatgcaagcaccaaccaaggtgactttaactaagcag |
346 |
Q |
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| T |
8101181 |
atgtatgtagtttaaggagtatatatttattgttcttttccttttatagattagcacttacttggtgcaagcaccaaccaaggtgactttaattaagcgg |
8101280 |
T |
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| Q |
347 |
ggtatgtttgcatgtgcact |
366 |
Q |
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| T |
8101281 |
ggtatgtttgcatgtgcact |
8101300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 8100931 - 8101057
Alignment:
| Q |
1 |
aatgttatgtttttctgaaaaaatgagaataataataataccccttttatagacaaggatattaaacctagtccaagacaaggacattaaacggtcgtcg |
100 |
Q |
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| T |
8100931 |
aatgttatgtttttctgaaaaaatgagaata---ataataccccttttatagacaaggatattaaacctagtccaagacaaggacattaaacggtcgtcg |
8101027 |
T |
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| Q |
101 |
tttccttttatttacattgtcgtttcactc |
130 |
Q |
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| T |
8101028 |
tttccttttatttacattgtcgtttcactc |
8101057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8099944 - 8099890
Alignment:
| Q |
1 |
aatgttatgtttttctgaaaaaatgagaataataataataccccttttatagacaa |
56 |
Q |
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| T |
8099944 |
aatgttatgtttttctgaaaaaatg-gaataataataataccccttttatagacaa |
8099890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 327
Target Start/End: Original strand, 7913298 - 7913360
Alignment:
| Q |
265 |
gtatatatttattgttcttttccttttatagattagcacttacttgatgcaagcaccaaccaa |
327 |
Q |
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| T |
7913298 |
gtatatatttatcgttcttttcctttcatagattagcacttacttggtgcaggcaccaaccaa |
7913360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 327
Target Start/End: Original strand, 8102698 - 8102743
Alignment:
| Q |
282 |
ttttccttttatagattagcacttacttgatgcaagcaccaaccaa |
327 |
Q |
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| T |
8102698 |
ttttccttttatagattagcatttacttagtgcaagcaccaaccaa |
8102743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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