View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10102_high_10 (Length: 289)
Name: NF10102_high_10
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10102_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 12246951 - 12247208
Alignment:
| Q |
1 |
aattttcttatctaaattgaaggccataacagaagtattaaatgatgaagaaattgtagaatggaagaaaattatggagggatgcaggnnnnnnnn-cta |
99 |
Q |
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| T |
12246951 |
aatttccttatctaaattgaaggccataacagaagtactaaatgatgaagaaattgtagaatggaagaaaattatggagggatgcaggaaaaagaaacta |
12247050 |
T |
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| Q |
100 |
ttgagagataaagggtgagaaccatt-tagcagttgtggaaaaacggaagaaatacacagtagagggtacaaatcatgataaattatttttgagttaatt |
198 |
Q |
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| T |
12247051 |
ttgagagataaagggtgtgaaccattgtagaagttgtggaaaaacggaagagatacacagtagagggtataaatcatgataaattatttttgagttaatt |
12247150 |
T |
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| Q |
199 |
gggttgcagttatttctttctgtttcttttttattgggttgggtcatacttaagtttc |
256 |
Q |
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| T |
12247151 |
gggttgcagttatttctttctgtttcttttttattgggttgggtcatagttaagtttc |
12247208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 24899350 - 24899145
Alignment:
| Q |
9 |
tatctaaattgaaggccataacagaagtattaaatgatgaagaaattgtagaatggaagaaaattatggagggatgcaggnnnnnnnnc---tattgaga |
105 |
Q |
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| T |
24899350 |
tatctaaattgaaggccataacataagtactaaatgatgaagaaattgtagaatggaaggaaattatggagggatgcaggaaaaagaaacaatattgaga |
24899251 |
T |
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| Q |
106 |
gataaagggtgagaaccatt-tagcagttgtggaaaaacggaagaaatacacagtagagggtacaaatcatgataaattatttttgagttaattgggttg |
204 |
Q |
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| T |
24899250 |
gataaagggtgtgaaccattgtaccagttgtggaaaaacggaagagatacacagtagagggtacaaatcaagataaattattttttagttaattgggttg |
24899151 |
T |
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| Q |
205 |
cagtta |
210 |
Q |
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|||||| |
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| T |
24899150 |
cagtta |
24899145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 24897976 - 24897922
Alignment:
| Q |
202 |
ttgcagttatttctttctgtttcttttttattgggttgggtcatacttaagtttc |
256 |
Q |
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| T |
24897976 |
ttgcatttatttctttccgtttcttttttattgggttgggtcataattaagtttc |
24897922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 25401250 - 25401304
Alignment:
| Q |
202 |
ttgcagttatttctttctgtttcttttttattgggttgggtcatacttaagtttc |
256 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
25401250 |
ttgcatttatttctttccgtttcttttttattgggttgggtcatagttaagtttc |
25401304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 25497430 - 25497484
Alignment:
| Q |
202 |
ttgcagttatttctttctgtttcttttttattgggttgggtcatacttaagtttc |
256 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
25497430 |
ttgcatttatttctttccgtttcttttttattgggttgggtcatagttaagtttc |
25497484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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