View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10102_high_5 (Length: 384)
Name: NF10102_high_5
Description: NF10102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10102_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 26113061 - 26112910
Alignment:
| Q |
16 |
aattataccattcatttaaactattgtctttgcaaatagttttatctcttttattatattataggaacaatttcatcacaatatgaataatgta---nnn |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26113061 |
aattataccattcatttaaactattgtctttgcaaataattttatctcttttattatattataggaacaatttcatcacaataggaataatgtatttttt |
26112962 |
T |
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| Q |
113 |
nnnnngttgaaagtaataggaataatgtatttaaaatttatatttgttattg |
164 |
Q |
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| T |
26112961 |
tttttgttgaaagtaataggaataatgtatttaaaatttatatttgttattg |
26112910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 26112185 - 26112084
Alignment:
| Q |
283 |
tgaaaatatcaatccaaaatcacatgttcctttatctatatatagttatagatggattctcatattcccatcaagaatatttgagaggctagtagttcaa |
382 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26112185 |
tgaaaatatcaatccaaaatcacatattcctttatctatatataggtatagatgtattctcatattcccatcaagaatatttgagaggctagtagttcaa |
26112086 |
T |
|
| Q |
383 |
tc |
384 |
Q |
| |
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|| |
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| T |
26112085 |
tc |
26112084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 284 - 384
Target Start/End: Complemental strand, 26056616 - 26056514
Alignment:
| Q |
284 |
gaaaatatcaatccaaaatcacatgttcctttatctatatatagttatagatggattctcatattcccatcaagaata--tttgagaggctagtagttca |
381 |
Q |
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||||| |||| |||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26056616 |
gaaaaaatcactccaaaatcacacattcctttttctatatataggtatagatgaattctcatattcccatcaagaatatgtttgagaggctagtagttca |
26056517 |
T |
|
| Q |
382 |
atc |
384 |
Q |
| |
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||| |
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| T |
26056516 |
atc |
26056514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 26085817 - 26085751
Alignment:
| Q |
318 |
ctatatatagttatagatggattctcatattcccatcaagaatatttgagaggctagtagttcaatc |
384 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26085817 |
ctatatataggtatagatgaattctcatattcccatcaagaatgtttgagaggctagtagttcaatc |
26085751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 26047950 - 26047890
Alignment:
| Q |
16 |
aattataccattcatttaaactattgtctttgcaaatagttttatctcttttattatattat |
77 |
Q |
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| T |
26047950 |
aattataccatttatttaaactattgtcattgcaaataattttatct-ttttattatattat |
26047890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 26053131 - 26053071
Alignment:
| Q |
16 |
aattataccattcatttaaactattgtctttgcaaatagttttatctcttttattatattat |
77 |
Q |
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|||||||||||| ||||||||||||||| ||||||||| |||||||| |||||||||||||| |
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|
| T |
26053131 |
aattataccatttatttaaactattgtcattgcaaataattttatct-ttttattatattat |
26053071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 26089231 - 26089172
Alignment:
| Q |
16 |
aattataccattcatttaaactattgtctttgcaaatagttttatctcttttattatattat |
77 |
Q |
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|||||||||||| ||||||||||||||| |||||| | |||||||| |||||||||||||| |
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| T |
26089231 |
aattataccatttatttaaactattgtcattgcaatt--ttttatcttttttattatattat |
26089172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 26079769 - 26079727
Alignment:
| Q |
16 |
aattataccattcatttaaactattgtctttgcaaatagtttt |
58 |
Q |
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|||||||||||| ||||||||||||||| ||||||||| |||| |
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| T |
26079769 |
aattataccatttatttaaactattgtcattgcaaataatttt |
26079727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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